Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0292 ATGGGTCAAGGTTGGCGGAGAACGGACGACGGAGGAAACAGCGGACAAGAGCATGCCGGAGTTTCAGGGGATGAGAAAAACAGAGTAACCACATGCTATCTACGACCTGGGTTTTACCTTTTAGATTTCAGAAATGGTGGTGCGGCGGATGAGGGAGCTGATGTTTCTGTGTCACGCTCGGATATGGCAAAAGCAAATGCTAAGGAGAAATCCACTTCTACGGCTCACCACCCTCCTTACTTCGATATGATAGCGGATGCCATAACCACATTGAGTGATCGCACGGGATCGAGTCAGCGGGCAATTGCCAAGTTCATCGAGGACAAGCACAAGAAACTGCTGCCCCCAAATTTCAGGACATTGCTCTCTGTTCAACTCAGGAAGTTCGTAAAATCGGAGAGGCTGTTCAAGGTGAAGAACTCCTTCAAGATCTCCTCGACGGAGAAGTTGAAATTGGTTATTCAGGAAAGCCAGAAGGACAACAAAATAGTCAAATCCACCAAAAAGAGTGCGACGCCTCTGCAGAAGGCTTCCAAGGGGATCACAGAGAAGGGGTTGAAGACCAAGAGGCTGAGTCGCGTGAAGACGCCGGAGGCTCTCGAGAAGGCCAACGGAAATACTCAGAAGAAGTCGGTGGCTTCCTCGGCGGGGAAAGTGAAGAGTCTGAGTCAGGTTAAGACACCTGAAGCAATGAAGAAGAAGACGAACGTCACCCCTAAGAAGCGGAAGACTGCTTCCAAACCCATTAATTCTTCCAGACCTGCGAAGAAGGCTAAGAAATAA 783 0.4943 MGQGWRRTDDGGNSGQEHAGVSGDEKNRVTTCYLRPGFYLLDFRNGGAADEGADVSVSRSDMAKANAKEKSTSTAHHPPYFDMIADAITTLSDRTGSSQRAIAKFIEDKHKKLLPPNFRTLLSVQLRKFVKSERLFKVKNSFKISSTEKLKLVIQESQKDNKIVKSTKKSATPLQKASKGITEKGLKTKRLSRVKTPEALEKANGNTQKKSVASSAGKVKSLSQVKTPEAMKKKTNVTPKKRKTASKPINSSRPAKKAKK 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0292 260 Gene3D - 71 162 IPR036388 -
Bisa03g0292 260 Pfam linker histone H1 and H5 family 77 144 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa03g0292 260 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 76 146 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa03g0292 260 PANTHER HISTONE H1 63 251 - -
Bisa03g0292 260 MobiDBLite consensus disorder prediction 164 260 - -
Bisa03g0292 260 MobiDBLite consensus disorder prediction 182 197 - -
Bisa03g0292 260 SMART h15plus2 74 141 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa03g0292 260 SUPERFAMILY "Winged helix" DNA-binding domain 73 149 IPR036390 -
Bisa03g0292 260 CDD H15 74 151 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa03g0292 260 PRINTS Histone H5 signature 223 242 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa03g0292 260 PRINTS Histone H5 signature 63 84 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa03g0292 260 PRINTS Histone H5 signature 162 176 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa03g0292 260 PRINTS Histone H5 signature 90 107 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa03g0292 260 MobiDBLite consensus disorder prediction 201 222 - -
Bisa03g0292 260 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0292 Bisa-ChrBisa03 3923757 3925610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0292 73 144 Single Myb Histone (SMH) Gene Family AT1G72740 38.889 1.90e-10 58.2