Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0272 ATGGAAGAGGTAGTGTTATTCGTCGATGATTTGAAATCACTTTCCGGTATTCCTCGCTGCAGAATATGTCACGAAGATGAATTTGAGAGCTCCAAGAGCTTCGAAGCTCCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAATACAACTTGTGAAATATGTCTCCAGCAATACGAATCTGGATATACAGTAAGTCCAAAGAAATCTCAGATAATGGATGCAGCAATGACCATTAGAGATAGCCTGCAAATTCCAAGGGAGCAAGAACCGTTGGACGCAAGAATAGAGGGTACTGTAGAAGGAGTGCCAATAGAAAGTGATGACTCTGAATGCACGTCTGCTGCTGATAGAGGTGCATCTTGCTGCCGATCACTGGCTTTGACTTTCACATTCATCTTGCTCGTGAGACATCTTTTCGCAGTGCTTACAAGTAGAACGGAAGACTACCCATTTACACTTTTTACTGTCTTAATACTAAAAGCTAGCGGAATTATTCTACCGATGTACATAATTATAAGGGCGATCGGAGCCATATATAGCGGTATTGAGCAACATTATCAGGATTCCGACGATGACACATCAACGTCTGAGGGAGACGACGAAGAGAACGAGCCACAGCATGATTAA 666 0.4294 MEEVVLFVDDLKSLSGIPRCRICHEDEFESSKSFEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQQYESGYTVSPKKSQIMDAAMTIRDSLQIPREQEPLDARIEGTVEGVPIESDDSECTSAADRGASCCRSLALTFTFILLVRHLFAVLTSRTEDYPFTLFTVLILKASGIILPMYIIIRAIGAIYSGIEQHYQDSDDDTSTSEGDDEENEPQHD 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0272 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 81 IPR013083 -
Bisa03g0272 221 MobiDBLite consensus disorder prediction 199 221 - -
Bisa03g0272 221 Pfam Protein of unknown function (DUF3675) 74 188 IPR022143 -
Bisa03g0272 221 CDD RING_CH-C4HC3_MARCH 20 67 - -
Bisa03g0272 221 SMART ringv_2 19 68 IPR011016 GO:0008270
Bisa03g0272 221 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Bisa03g0272 221 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 18 197 IPR033275 -
Bisa03g0272 221 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Bisa03g0272 221 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Bisa03g0272 221 SUPERFAMILY RING/U-box 18 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0272 Bisa-ChrBisa03 3631411 3633855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0272 20 67 C3H Transcription Factor Family AT2G37950 42.857 1.72e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0272 03 3631411 3633855 Bisa07g1653 07 42332400 42334771 CCT
Bisa03g0272 03 3631411 3633855 Bisa03g0272 03 3631411 3633855 ECH