Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0256 ATGAGGGCGGCGCCGCCTCCGCAGCCAAAGGAGAAGGCAGAGGACAGGTATAGAGATGATGACGAGGACGACCCGATGGAGAGTTTCTTGAGGGCGAAGAAGGACGTAGGGTTGACTCTGGCATCCGAGGCTCTGCAGGCTGGATACAATTCCGACGAAGAAGTTTATGCTGCTGCGAAGGCTGTAGACGCGGGAATGTTAGAGTATGATTCTGACGACAATCCCATTATTGTTGACAAGAAGAAAATTGAGCCGATACCTGCTTTGGATCATAGTTCCATTGAGTACGAGCCCTTTAACAAGGATTTTTACGAGGAGAAACCTTCAATATCAGGCATGATGGAGCAAGATGTTGCTGAATACCGGAAGAGTTTGGCCATTCGGGTATCAGGCTTTGATGTTCCAAAGCCAATCAAGACATTTGAAGACTGTGGTTTCTCTCCACAAATTATGAGTGCCATAAAGAAGCAAGGTTATGAGAAGCCAACATCAATACAATGTCAAGCGCTACCAGTTGTGCTTTCTGGCCGAGATATAATTGGTATAGCAAAAACTGGTTCTGGTAAAACTGCTGCTTTTGTGCTTCCTATGATTGTCCATATCATGGATCAGCCTGAACTTCAGAAGGAAGAAGGTCCTATAGGAGTAATTTGCGCCCCCACTAGAGAACTGGCACATCAGATATATTTGGAGTCCAAGAAATTTGCAAAATCGTATGGGATACGTGTGTCTGCTGTCTGTGGTGGAATGTCAAAACTTGATCAGTTCAAAGAACTGAAGGCAGGCTGTGAGATAGTTGTTGCTACTCCTGGCAGATTGATAGACATGCTGAAAATGAAGGCACTTACAATGATGAGAGCAACTTACCTGGTGCTCGATGAGGCTGATCGTATGTTTGACCTTGGATTTGAGCCACAGGTGAGGTCCATTGTTGGCCAGATCAGGCCTGACCGTCAAACTTTACTCTTTTCTGCAACAATGCCCCGTAAAGTTGAGAAGTTGGCCAGAGAAATTCTTACTGATCCTGTTAGAGTAACAGTTGGGGAGGTTGGAATGGCAAATGAAGATATTACTCAAGTTGTTCATGTAATTCCATCTGATTCAGAGAAATTGCCATGGCTTCTTGAGAAGCTGCCTGGAATGATTGATGAAGGTGATGTCTTAGTATTTGCTTCCAAAAAGGCTACTGTGGATGAAATTGACTCACAACTGGCTCAAAGAAACTTTAAAGTAGCAGCTCTGCATGGTGATAAAGATCAAGCTTCCCGTATGGATATCTTACAGAAGTTTAAATCGGGTGCCTACCATGTGCTTATTGCTACTGATGTCGCTGCTCGTGGTCTTGACATCAAATCAATTAAGTCAGTGGTAAACTTTGATATTGCAAAAGATATGGATATGCATGTACATCGCATTGGTAGAACAGGTCGTGCTGGTGACAAAGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGGTTTGCTGGAGAACTGGTTAATAGCTTGATAGCAGCTGGTCAAAATGTGTCCATGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCCAAACGTGATGCAAGAAAAGGAGGTGGGAGAAAAGGTAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGTGGTGTTGGTGGTGGTGGTGGTGGTGGTCGAGGTGTGCGTGGGGTGGATTATGGCTTGGGCATTGGTTATACTCCAGAGTCCAGTTCACCTGCAGTTCCTAGTCGATCCGCCACCGTAAACTCTCTGCGTACAGGAATGATGGCACAGTTTAGGAGTAACTTCGTTGCTGCTTCATCAAACTCTCAGAGTCAAGGCTTCAGTAACAGTACAAGCATGACTGCTAGTAAGAGACCAACCCTCTCTGGCTTCGTATCTGGCGGATCAATTGGCGGGGATATAAACACTAATCGGACTCCTGCTTCATCCAGTCCTGCTACATCGGCGGTAAATGCCACTAGTCAGAACTCTGGTCAGAAGAACACTGACAGCTCCACCTCTAGACCCAGAGAAAGGAGGAGGCCTTCAGGTTGGGATAGATAG 2076 0.4591 MRAAPPPQPKEKAEDRYRDDDEDDPMESFLRAKKDVGLTLASEALQAGYNSDEEVYAAAKAVDAGMLEYDSDDNPIIVDKKKIEPIPALDHSSIEYEPFNKDFYEEKPSISGMMEQDVAEYRKSLAIRVSGFDVPKPIKTFEDCGFSPQIMSAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLESKKFAKSYGIRVSAVCGGMSKLDQFKELKAGCEIVVATPGRLIDMLKMKALTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVHVIPSDSEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIDSQLAQRNFKVAALHGDKDQASRMDILQKFKSGAYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGRKGRGRGGGGGGGGGGGVGGGGGGGRGVRGVDYGLGIGYTPESSSPAVPSRSATVNSLRTGMMAQFRSNFVAASSNSQSQGFSNSTSMTASKRPTLSGFVSGGSIGGDINTNRTPASSSPATSAVNATSQNSGQKNTDSSTSRPRERRRPSGWDR 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0256 691 Pfam DEAD/DEAH box helicase 163 334 IPR011545 GO:0003676|GO:0005524
Bisa03g0256 691 MobiDBLite consensus disorder prediction 524 560 - -
Bisa03g0256 691 Gene3D - 101 346 IPR027417 -
Bisa03g0256 691 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 139 167 IPR014014 GO:0003724
Bisa03g0256 691 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 107 519 - -
Bisa03g0256 691 MobiDBLite consensus disorder prediction 611 691 - -
Bisa03g0256 691 CDD SF2_C_DEAD 357 489 - -
Bisa03g0256 691 SMART helicmild6 398 479 IPR001650 -
Bisa03g0256 691 MobiDBLite consensus disorder prediction 676 691 - -
Bisa03g0256 691 FunFam probable ATP-dependent RNA helicase DDX17 101 348 - -
Bisa03g0256 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 348 IPR027417 -
Bisa03g0256 691 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 291 299 IPR000629 -
Bisa03g0256 691 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 519 IPR001650 -
Bisa03g0256 691 MobiDBLite consensus disorder prediction 611 675 - -
Bisa03g0256 691 Pfam Helicase conserved C-terminal domain 382 479 IPR001650 -
Bisa03g0256 691 CDD DEADc_DDX42 150 346 - -
Bisa03g0256 691 Gene3D - 347 523 IPR027417 -
Bisa03g0256 691 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 170 345 IPR014001 -
Bisa03g0256 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 286 517 IPR027417 -
Bisa03g0256 691 MobiDBLite consensus disorder prediction 1 25 - -
Bisa03g0256 691 SMART ultradead3 158 360 IPR014001 -
Bisa03g0256 691 MobiDBLite consensus disorder prediction 7 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0256 Bisa-ChrBisa03 3512623 3517290 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0256 136 518 Eukaryotic Initiation Factors Gene Family AT3G19760 31.347 8.50e-64 216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0256 03 3512623 3517290 Bisa03g0256 03 3512623 3517290 ECH