LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g0177	ATGGAGGCCCTTACTTCGCCATGGAAGAAGGTACAGAACGAGCCCGATGCAGTCCAGCGTCATGGGCTCGTCGATGCGGATCACAAAAAATGGATCTTTCTCGTACATCGTCAGCGTCCTCATCGTCGCTTTGGGTCCAATTTAATTCGACTTCGGAGCTGGGGTCCACTTGGGGTTCAATTGGCGAATTATTGGTATCTTCTGGAGAAGTGGAGTCGATTTAATCAGCTAGATCAAAATAGTCCAGTTGAGGCTATGGATGATGCTGTATATCATGATTCCCGGACTGGAGGTCCAACGTTGAAGAAAGATAGGGACAAAAGTGAAAATATTTCGAAGATCTCAATGTTCGACTCACAGAGATTCAACGTTGTAAGCATTGACCAATCCGCTTATAGCATCACGGTGGTCCGAGCAGATCTTATATCTGATCCTTGTTCTTCGGATTTGACTAACATTTCCTTCGGGAAGCAATCCAATGTCTTCCATTACGAGTCCAATGTTGTGAATCTAACCCTATTCTACGATTGTCCCCAACAAATTTCCATTGGCCAAAAGGCCCAAAACAAGTTCTCGTGCCAATCTCAGACTGGGTTTGATGTGAAGTACAGTGTAGAATCTGAATCTAGGTGCAGCAGCTGCAGAAAATCTGAAGGAGCCGTGGGAGTGGGATACACAATGTGTCTGAATTTACCTGTTATTGCCGGGATGGATCTCACCCTTCTGACTGTAACGATTCCTGTATGCGCTTCTTCCCCCATTTTATCTCTTCATTTGCCTTCATCACTTTTCTCAAATTTTTACATTGCTATACATACCGCTCTTAGTCGTATGGTTGTTGTTGCAGAGGGATCATCATCTCCTCTATTCGCTATAGGTGTATCAGTTGCAATAAGTGTAGCATCGGTGATAGTACCGGTGATATGCGTGTCTATCTGCCTTCGCATAACCAAATCATTAAGACAGAAGGTTGACCAAGAAATTGAGGCTTCCATAAGAAACCATGGACCTCTACCTCTCACAAGATATAAATTCGCAGATGTGAAGAAAATGACCAAATCCTCGAAAGTGAAACTGGGACAAGGTGGATTTGGTGATGTTTATAGAGGAGAGTTACCCAATGGCTGCCCTGTGGCTGTTAAGATATTGAGAGCATCCAAAGGGAACGGCCAAGACTTTATCAATGAGGTTGCAAGCATCAGTAGAACTTCACATGTTAATGTTGTCACCCTTCTGGGATTCTGTTTGGAAGGTCACAACAAAGCTCTCATCTATGAATTTATGCCCAATGGATCCCTTGACAAGTTCATTTGTAACAAGGCTGATGAAACTGCACCATCCTTGAGTTGGGAACAGCTGTACCAAATAGCAATTGGGATAGCTCGAGGGCTTGAGTACTTGCATAGGGGATGCAACACTCGGATTCTTCATTTTGACATAAAACCTCATAACATCCTGTTGGATGAAAACTTTTGCCCAAAGATTTCAGATTTTGGGCTTGCTAAGCTTTGCCCTGGGAAAGAAAGCATCATTGCAATTTCAGAAGCCAGAGGGACTGTGGGATATCTAGCTCCAGAAGTTTTGAATAGAAACTTTGGGGGAGTTTCACACAAGTCTGATGTTTATAGCTATGGAATGATGCTGCTAGACATTGCCGGAGGGCGAAAAAACATGAATGGTGAAGCCAGTAACACAAGTGAGATATATTTTCCAGATTGGATTTACGATAAACTTGAGAAAGGGGGTGAGTTAGGACTTAATGGGGCGATGACGGCGGAGGAATATGATATTGCAAAGAGAATGACTATTGTGGGTCTGTGGTGCATTCAAACATTTCCAACTCATAGACCTACAATGAGTAGAGTAGTGGACATGTTAGAAGGAAGCTTGGATTCAATAGAAATCCCACCAAAGCCTGTCATGTCTTCCCCTGCAAGGCCAGCACCAGGATCTTCCACTGCCACTACATATTTGGGCACTGGAAGCTTTGCCCCAGATGCTGGAAAGGGTGTGGAATAG	2019	0.4388	MEALTSPWKKVQNEPDAVQRHGLVDADHKKWIFLVHRQRPHRRFGSNLIRLRSWGPLGVQLANYWYLLEKWSRFNQLDQNSPVEAMDDAVYHDSRTGGPTLKKDRDKSENISKISMFDSQRFNVVSIDQSAYSITVVRADLISDPCSSDLTNISFGKQSNVFHYESNVVNLTLFYDCPQQISIGQKAQNKFSCQSQTGFDVKYSVESESRCSSCRKSEGAVGVGYTMCLNLPVIAGMDLTLLTVTIPVCASSPILSLHLPSSLFSNFYIAIHTALSRMVVVAEGSSSPLFAIGVSVAISVASVIVPVICVSICLRITKSLRQKVDQEIEASIRNHGPLPLTRYKFADVKKMTKSSKVKLGQGGFGDVYRGELPNGCPVAVKILRASKGNGQDFINEVASISRTSHVNVVTLLGFCLEGHNKALIYEFMPNGSLDKFICNKADETAPSLSWEQLYQIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDENFCPKISDFGLAKLCPGKESIIAISEARGTVGYLAPEVLNRNFGGVSHKSDVYSYGMMLLDIAGGRKNMNGEASNTSEIYFPDWIYDKLEKGGELGLNGAMTAEEYDIAKRMTIVGLWCIQTFPTHRPTMSRVVDMLEGSLDSIEIPPKPVMSSPARPAPGSSTATTYLGTGSFAPDAGKGVE	672

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g0177	672	MobiDBLite	consensus disorder prediction	88	107	-	-
	Bisa03g0177	672	CDD	STKc_IRAK	359	628	-	-
	Bisa03g0177	672	Pfam	Protein tyrosine and serine/threonine kinase	357	626	IPR001245	GO:0004672\|GO:0006468
	Bisa03g0177	672	MobiDBLite	consensus disorder prediction	634	672	-	-
	Bisa03g0177	672	ProSiteProfiles	Protein kinase domain profile.	353	630	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g0177	672	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	475	487	IPR008271	GO:0004672\|GO:0006468
	Bisa03g0177	672	FunFam	PR5-like receptor kinase	428	638	-	-
	Bisa03g0177	672	Gene3D	Transferase(Phosphotransferase) domain 1	428	634	-	-
	Bisa03g0177	672	MobiDBLite	consensus disorder prediction	646	660	-	-
	Bisa03g0177	672	ProSitePatterns	Protein kinases ATP-binding region signature.	359	381	IPR017441	GO:0005524
	Bisa03g0177	672	Gene3D	Phosphorylase Kinase; domain 1	315	427	-	-
	Bisa03g0177	672	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	325	643	IPR045874	GO:0004672
	Bisa03g0177	672	SMART	serkin_6	353	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g0177	672	SUPERFAMILY	Protein kinase-like (PK-like)	357	627	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g0177	Bisa-ChrBisa03	2258902	2270133	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g0177	295	641	Receptor kinase-like Gene Family	AT1G66910	53.824	8.83e-127	388

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Bisa03g0177		PK_Tyr_Ser-Thr	9.4e-45	CL0016