Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0065 ATGGTACTCGGATGGCGAAGAAGGAAGACCGGCCGCCGCACCGGCAAACCCACCATCGAGATTGTGGTTCCCAACCACTTCCGATGCCCAGTTTCGCTCGATTTGATGAAAGATCCCGTCACATTATCCACCGGCATCACCTACGATCGAGACAACATCGAAAGGTGGTTCCTTGAAGGCAACATCACATGCCCCGTCACCAATCAGATTCTCACTAACTTCGATCTCATCCCCAATCACACCCTTCGCATGATGATTCAAGATTGGTGCGTCGACAACCGACAATACGGGGTCGAAAGAATCCCCACCCCCAGAATCCCCATTTCCCCAATCCAAGTCGCCGAGGTTCTTCTCAACGTGAAATCTTCGGCGAGGCGTTTGGATCAGTATGGGTGTCTGGAATTGGTCCAGAAAATCGAGAGGTGGGGTGAAGAGAGCGAGAGAAATAGAAAGTGTATCGTTGAGAATGGAGCCACGGGTGCTTTGGCCTCTGCTTTTGATTCGTTTGCGAATGATTCTATTGAGAAGAACTTAAGTGTGTTGGAAGAGATTCTGTCTGCTCTCAATTGGATGTTCCCGCTTCAAATGGAAGCCCAGAAATCTTTGGGGTCTCAAGCTTCGTTACGTTGCATGGTGTGGTTTCTGAAGCATCAAGATCTTGCAGGGAAAGAGAAGTCCATTGTTGCTTTAAGGGAGCTTCTTTCTTTTGGGGATGAGCAGAATCTGGAGGCTTTAGCAGATATTGAAGGAGTCAACGAACTATTGGTGGGCTTCATCACCAAAAGAATCAGTCCAACCATAACAAAAGCTTCACTGGCTGTAGTCTTTTACTTGGTTTCATCTCCTACTTCTTCAGGTGAGAAGATGAGATTGAAATTCATAGAACTTGGGTTGGTTTCTTCATTGCTGGAGATCCTCCTTGACTCAGAGAGAAGCCTTTGTGAGAAGGCTTTGGCTATCTTGGATTCACTTTGCAGCTGTGAAGAAGGCAGAGAAAAAGCTGGCGGTAACGCCCTCACAGTTCCTTTATTGGTGAAGAAAATACTGCGAGTTTCAGCCATGGCCACAGACTCCTCTGTTTCTGCTATATGGAGGCTATCCAAGAATGGAGAGAAAGACGAAGGAAGAGTTCTGATAGAGGCACTGCAAGTTGGAGCCTTTCAGAAGCTATTGTTGGTGTTGCAGGTTGGATGTGGGGATGAAACCAAGTTCAAAGCCACTGAGCTTCTCAAACTTCTGAATCCTTACAGGGCTGGCATGGACTGCGTAGACTCAGATTTTAATAATCTCAAGAGATCATATTAA 1305 0.4682 MVLGWRRRKTGRRTGKPTIEIVVPNHFRCPVSLDLMKDPVTLSTGITYDRDNIERWFLEGNITCPVTNQILTNFDLIPNHTLRMMIQDWCVDNRQYGVERIPTPRIPISPIQVAEVLLNVKSSARRLDQYGCLELVQKIERWGEESERNRKCIVENGATGALASAFDSFANDSIEKNLSVLEEILSALNWMFPLQMEAQKSLGSQASLRCMVWFLKHQDLAGKEKSIVALRELLSFGDEQNLEALADIEGVNELLVGFITKRISPTITKASLAVVFYLVSSPTSSGEKMRLKFIELGLVSSLLEILLDSERSLCEKALAILDSLCSCEEGREKAGGNALTVPLLVKKILRVSAMATDSSVSAIWRLSKNGEKDEGRVLIEALQVGAFQKLLLVLQVGCGDETKFKATELLKLLNPYRAGMDCVDSDFNNLKRSY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0065 434 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
Bisa03g0065 434 SUPERFAMILY ARM repeat 175 381 IPR016024 -
Bisa03g0065 434 CDD RING-Ubox_PUB 24 76 IPR045210 -
Bisa03g0065 434 Pfam U-box domain 23 94 IPR003613 GO:0004842|GO:0016567
Bisa03g0065 434 SUPERFAMILY RING/U-box 20 99 - -
Bisa03g0065 434 FunFam RING-type E3 ubiquitin transferase 23 94 - -
Bisa03g0065 434 PANTHER WDSAM1 PROTEIN 20 414 IPR045185 GO:0061630
Bisa03g0065 434 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
Bisa03g0065 434 Gene3D - 112 418 IPR011989 -
Bisa03g0065 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 100 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0065 Bisa-ChrBisa03 915651 916955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0065 5 434 U-box Gene Family AT5G37490 46.275 9.02e-124 364