Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0049 ATGTCAATTCCCAGTTCGGAGCAGTTCTCTTGCGCAGAGAATGGCACCACTCCAACTACCAAAAGGAAGCGAAGGCCCGCCGGCACCCCAGATCCAGATGCAGAGGTGGTGTCTCTGTCCCCCAAGACCCTATTGGAATCGGACCGTTACGTGTGCGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTGCAGATGCACCGGCGTCGCCACAAGGTGCCCTGGAAGCTGCTGAAGAGGGAGACGCCGGTGGTGAGGAAGCGGGTGTTCGTGTGCCCGGAGCCCACGTGCTTGCACCACGACCCCTGCCACGCCCTCGGCGACCTCGTCGGCATCAAGAAGCACTTCCGCCGCAAGCACAGCAACCACAAGCAGTGGGTCTGCCACCGCTGTAACAAGGCCTACGCCGTCCAGTCCGACTACAAGGCCCATCTCAAGACCTGTGGCACCAGAGGCCATTCTTGTGACTGTGGCCGTGTCTTCTCTAGGGTGGAGAGCTTCATCGAACACCAAGACGCGTGCAACATGGGGCGGGTGCGGGCGGGGGCGGAGTCGCAGCCGCTGCAACCAGCGTGCCTGTCTCGAACCACATCGAGCCCCAGCCCCTCCAGCGAAACCAATTTCTGCACGGGTCCAGGTCCGGCTTGGCCACCCCCGGCTCTAGCCATCCCGACGCCAACCGAACCCGCATTCTTCAACAACCCTACCCCTGATCAAACCTCGCCCAACCCCAACAGCAATAACAAACTCCACCCCAACTTGGACCTCCAGCTGTCAACAGCCACTCCCAATGACGTCGCACGAGACGAGACCCACTCCACCCAATTGCAACTCTCGATAGGGTCGTCGGACATGAGCGACAAAAACGAATCGAATAGGAATTCGTCGCCGAAGGAGAGCAGTAACAGCAGCGAGAAGCCGCAGGCGGCGACTGCGAGGGTTCAAGAGGAGGCGCGTGAGCAGGTGAGGATAGCCATGGCGGAGAAGGCGTACGCGGAGGAGGCGAGGAAGGAGGCAAAGAGGCAGATGGAGCTGGCGGAGCAGGAGTTCTCCAACGCCAAGAGAATCAGGCAGCAAGCGCAAGCGGAGCTCGACAAAGCCTACGCTCTGAAAGAGCAAGCCGTTAAACAGATCAATTCCACCATGCTTCAGATCACATGCCACGCCTGCAAGCAACAGTTTCAGTTTCAACGACCCCCCAATTTGATAACGGAAGGTGGCGCCCAACTTCAAGTACTCCACAACAACGTCAATGACGCCCAACAAAACCACTAA 1278 0.5908 MSIPSSEQFSCAENGTTPTTKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHRCNKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRVRAGAESQPLQPACLSRTTSSPSPSSETNFCTGPGPAWPPPALAIPTPTEPAFFNNPTPDQTSPNPNSNNKLHPNLDLQLSTATPNDVARDETHSTQLQLSIGSSDMSDKNESNRNSSPKESSNSSEKPQAATARVQEEAREQVRIAMAEKAYAEEARKEAKRQMELAEQEFSNAKRIRQQAQAELDKAYALKEQAVKQINSTMLQITCHACKQQFQFQRPPNLITEGGAQLQVLHNNVNDAQQNH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0049 425 MobiDBLite consensus disorder prediction 1 37 - -
Bisa03g0049 425 Coils Coil 323 378 - -
Bisa03g0049 425 MobiDBLite consensus disorder prediction 188 319 - -
Bisa03g0049 425 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 379 IPR031140 -
Bisa03g0049 425 MobiDBLite consensus disorder prediction 1 17 - -
Bisa03g0049 425 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Bisa03g0049 425 MobiDBLite consensus disorder prediction 190 211 - -
Bisa03g0049 425 Gene3D Classic Zinc Finger 112 189 - -
Bisa03g0049 425 Gene3D Classic Zinc Finger 28 90 - -
Bisa03g0049 425 MobiDBLite consensus disorder prediction 233 311 - -
Bisa03g0049 425 FunFam protein indeterminate-domain 12-like 29 97 - -
Bisa03g0049 425 SMART c2h2final6 91 121 IPR013087 -
Bisa03g0049 425 SMART c2h2final6 127 154 IPR013087 -
Bisa03g0049 425 SMART c2h2final6 50 72 IPR013087 -
Bisa03g0049 425 SUPERFAMILY beta-beta-alpha zinc fingers 47 73 IPR036236 -
Bisa03g0049 425 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 72 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0049 Bisa-ChrBisa03 720408 722499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0049 13 396 C2H2 Transcription Factor Family AT2G01940 57.960 2.60e-143 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa03g0049 None None None