Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0039 ATGTGCAGTAGAGGCCATTGGAGGCCAGCCGAGGATGAGAAACTTCGGGAGTTGGTGGAGCGCTATGGACCTCATAACTGGAACGCCATAGCTGAAAAGCTTCGAGGAAGATCAGGGAAGAGCTGCAGGTTGAGGTGGTTCAATCAACTGGACCCAAGAATCAATAGGAGTCCATTCACAGAGGAAGAGGAGGAGAGGCTTCTTGCTTCTCATCGGGTTCATGGGAATAGATGGGCTGTGATTGCGAGGCTGTTTCCGGGCCGAACTGATAATGCTGTCAAGAATCACTGGCACGTTATGATGGCCAGGGTTCGCCGAGAAAGGTCTAAGCTTTATGCAAAACGACCTCCTCTTCACATCCCAAATCATTCTCCACACCATCGTGATCATGAGGATGAGGATCTCTCAGTCTCAAATACAAGGTCCAGGACTACCACTACTACCACCCTCCCTCTCCATCTCCCTCTCCCTTCTTTCCTTGATAAATACTATCATCAGAAGCATGCCTTCCCCTACCCTGCTTATCGCCTCACACATAACCCTCTCCTCCAATTCCCCAACAAGTTTCATCTTCAACATCCAACCTCCTCTTCATCAATGCTTCATGATAGAAGCCAGTCGGTTGAGTTCTATGATTTTCTTCAAGTAAACACTGATTCCAACAGAAGCGAAGTAACAGACAATGCCAGAAGAGAAGACGAGGAAGTGAACCAAGATGCAGTGGGACAAGAGAACAAGGATAATGGTGCTCCATTTATTGATTTTTTGTCCGTTGGAAGCTCCTGA 786 0.4771 MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRVHGNRWAVIARLFPGRTDNAVKNHWHVMMARVRRERSKLYAKRPPLHIPNHSPHHRDHEDEDLSVSNTRSRTTTTTTLPLHLPLPSFLDKYYHQKHAFPYPAYRLTHNPLLQFPNKFHLQHPTSSSSMLHDRSQSVEFYDFLQVNTDSNRSEVTDNARREDEEVNQDAVGQENKDNGAPFIDFLSVGSS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0039 261 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Bisa03g0039 261 FunFam MYB transcription factor 4 55 - -
Bisa03g0039 261 Pfam Myb-like DNA-binding domain 7 67 - -
Bisa03g0039 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Bisa03g0039 261 MobiDBLite consensus disorder prediction 122 138 - -
Bisa03g0039 261 SMART sant 55 103 IPR001005 -
Bisa03g0039 261 SMART sant 3 52 IPR001005 -
Bisa03g0039 261 PANTHER MYB PROTEIN-RELATED 4 154 - -
Bisa03g0039 261 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Bisa03g0039 261 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Bisa03g0039 261 Gene3D - 4 55 - -
Bisa03g0039 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Bisa03g0039 261 CDD SANT 58 101 IPR001005 -
Bisa03g0039 261 CDD SANT 7 48 IPR001005 -
Bisa03g0039 261 Gene3D - 57 130 - -
Bisa03g0039 261 MobiDBLite consensus disorder prediction 221 251 - -
Bisa03g0039 261 MobiDBLite consensus disorder prediction 224 241 - -
Bisa03g0039 261 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0039 Bisa-ChrBisa03 615842 617865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0039 1 261 MYB Transcription Factor Family AT1G17950 52.574 1.99e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa03g0039 Myb_DNA-bind_6 1.1e-16 CL0123