Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0030 ATGGAGTACGGCAGTGGAGGCGATGGCTCCCCCGGGGATCACCACCCCCACCCACACGACGCTTCTGATTCCCAAAGGAGCAAAAAGCGTTACCATCGTCACACTGCTAACCAGATTCAGAGACTTGAATCAATGTTCAAAGAGTGTCCCCATCCAGACGAAAAGCAGCGATTGCAGTTAAGCAGGGAGCTAGGCTTGGCCCCTAGGCAGATCAAGTTCTGGTTCCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAAAGAACAGATAACTGTGCCCTGCGAGCAGAGAATGACAAGATACGATGCGAGAACATAGCCATCAGAGAGGCCCTCAAAAACGTCATATGCCCCTCTTGTGGTGGCCCTCCTCTCCACGAGGATTCCTATTTCGATGAACAAAAGTTGCGTTTGGAGAATGCCCAATTGAAAGAAGAGCTTGATAGAGTATCTAGCATTGCAGCCAAGTACATTGGAAGACCAATTTCCCAACTCCCACCTGTTCAGCCCATTCATATATCATCTTTAGATTTGTCCATGGGAAGCTTTGGAAGCCAAGGAATAGGTGGCCCCTCTCTCGATCTTGATCTCCTCCCGGGGAATTCTTCATCTACTCCAAGCTTGCCTTATCACCCACCATCTCTTTCGGACATCGATAAGTCCCTCATGTCAGACATTGCCGCCCACGCCATGGAAGAGTTACTCAGACTTCTGCAGACTAATGAGCCCCTGTGGATGAAGTCAAGCTCAGACGGAAGAGACGTTCTTAATCTTGAGACCTACCAAAACATGTTCCCCAAAGCAAACACTCGCCTCAAGAACCCCCATGTTCGGGTTGAAGCGTCTCGAGATTCAGGAGTCGTGATTATGAATGGCTTGACTTTGGTTGACATGTTTATGGACGCTAACAAGTGGATGGAACTATTTCCTACAATAGTCTCAGTGGCAACTACGATTAAAGTATTATCTTCTGGGATGCTGGGTGGTCATAGTGGCTCCTTGCAATTGATGTATGGAGAGCTTCAAGTGCTTTCTCCGCTTGTTTCAACGCGAGAATTCTACTTCCTACGTTACTGTCAGCAAGTTGAGCAAGGCTTATGGGCAATAGCGGATGTTTCTTATGACTTCCCACAAGACAACCAATTTGCTCATCAGTTTCGGTCTCATCGTCTTCCTTCTGGTTGCCTCATCCAGGACATGCCTAATGGGTATTCCAAGGTTACTTGGGTTGAACATGTTGAGATAGAGGATAAAACTCCAACTCATCGGCTATACAGAAATCTTATTTATAGTGGGTTGGCATTTGGGGCAGAAAGATGGCTTACTACTCTTCAGAGAATGTGTGAAAGATTCGCTTGTTTAATGGTTACAGGCAATTCTACCCGCGATCTTGGAGGAGTGATTCCGTTGCCGGAGGGCAAGAGGAGCATGATGAAACTTGCACAGAGGATGGTGACCAATTTCTGCACGAGCATCAGCGCCTCCAATGGCCGCAGATGGACCACACTTTCGGGGCTGAACGAGGTTGGAGTCAGAGTCACTGTACACAAGAGCTCGGATCCCGGTCAACCCAACGGCGTGGTGCTCAGTGCAGCCACTACCATCTGGCTCCCCATTCCTCCCCAGGCCGTCTTCGATTTCTTGAAGGATGAGAGAAAAAGACCTCTGTGGGATGTGCTTTCCAACGGTAATGCTGTGCAAGAGGTTGCCCACATAGCCAATGGCTCTCACCCTGGGAACTGCATATCTGTTCTGCGAGCGTTCAACACCAGTCAGAACAACATGGTGATACTGCAAGAGAGCTGCATAGACTCTTCAGGATCCCTTGTCGTGTATTGCCCGGTTGATCTGCCGGCCATCAACATCGCCATGAGCGGGGAGGACCCCTCCTACATTCCGCTGCTACCGTCGGGGTTCACGGTGTCGCCGGACGGGCAGGGGGAGCAAGGAGGAGACGGAGCATCAAGCAGCTCGAGCACACAGAGGAGGTCAGGGGGATCACTGATCACAGTGGCATTTCAGATTCTGGTGAGCAGCTTGCCATCTGCGAAGCTGAACTTGGAATCGGTGACCACGGTTAATAATCTCATCGGCACCACTGTGCAGCAGATTAAGGATGGGTTGAACTGTTCAAGCGCCTGA 2142 0.5019 MEYGSGGDGSPGDHHPHPHDASDSQRSKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERTDNCALRAENDKIRCENIAIREALKNVICPSCGGPPLHEDSYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGSFGSQGIGGPSLDLDLLPGNSSSTPSLPYHPPSLSDIDKSLMSDIAAHAMEELLRLLQTNEPLWMKSSSDGRDVLNLETYQNMFPKANTRLKNPHVRVEASRDSGVVIMNGLTLVDMFMDANKWMELFPTIVSVATTIKVLSSGMLGGHSGSLQLMYGELQVLSPLVSTREFYFLRYCQQVEQGLWAIADVSYDFPQDNQFAHQFRSHRLPSGCLIQDMPNGYSKVTWVEHVEIEDKTPTHRLYRNLIYSGLAFGAERWLTTLQRMCERFACLMVTGNSTRDLGGVIPLPEGKRSMMKLAQRMVTNFCTSISASNGRRWTTLSGLNEVGVRVTVHKSSDPGQPNGVVLSAATTIWLPIPPQAVFDFLKDERKRPLWDVLSNGNAVQEVAHIANGSHPGNCISVLRAFNTSQNNMVILQESCIDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTVSPDGQGEQGGDGASSSSSTQRRSGGSLITVAFQILVSSLPSAKLNLESVTTVNNLIGTTVQQIKDGLNCSSA 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0030 713 Pfam Homeodomain 28 83 IPR001356 GO:0003677
Bisa03g0030 713 Coils Coil 133 153 - -
Bisa03g0030 713 ProSiteProfiles START domain profile. 216 453 IPR002913 GO:0008289
Bisa03g0030 713 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677
Bisa03g0030 713 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 26 708 IPR042160 -
Bisa03g0030 713 CDD homeodomain 28 86 IPR001356 GO:0003677
Bisa03g0030 713 SUPERFAMILY Homeodomain-like 6 85 IPR009057 -
Bisa03g0030 713 Gene3D - 224 449 IPR023393 -
Bisa03g0030 713 FunFam Homeobox-leucine zipper protein HDG1 15 101 - -
Bisa03g0030 713 CDD START_ArGLABRA2_like 220 449 - -
Bisa03g0030 713 MobiDBLite consensus disorder prediction 12 27 - -
Bisa03g0030 713 SMART HOX_1 27 89 IPR001356 GO:0003677
Bisa03g0030 713 MobiDBLite consensus disorder prediction 642 663 - -
Bisa03g0030 713 SUPERFAMILY Bet v1-like 470 705 - -
Bisa03g0030 713 Gene3D - 13 99 - -
Bisa03g0030 713 SMART START_1 225 450 IPR002913 GO:0008289
Bisa03g0030 713 FunFam Homeobox-leucine zipper protein GLABRA 2 225 449 - -
Bisa03g0030 713 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981|GO:0006355
Bisa03g0030 713 MobiDBLite consensus disorder prediction 649 663 - -
Bisa03g0030 713 MobiDBLite consensus disorder prediction 1 35 - -
Bisa03g0030 713 SUPERFAMILY Bet v1-like 217 451 - -
Bisa03g0030 713 Pfam START domain 226 450 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0030 Bisa-ChrBisa03 494803 498107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0030 23 713 Homeobox Transcription Factor Family AT1G73360 67.614 0.0 955
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa03g0030 START 3.7e-50 CL0209