Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0028 ATGGAGATGCAGGATCAAGTAGAAAGCACAAGGTCAAACAACTTCATCACAGCCAGTGACCGCCATTTCAACAGTTGTGCAAAATTGGAAAATGTTGTCCATTTGAAGGATATAAATTCTATTGGAGACAATCATACTCCAAAGGCTAGGAAACCATATACCATTACTAAGCAAAGGGAAAAGTGGACAGAGGAAGAGCATAAAAAATTCCTTGAAGCTTTGAAATTGTATGGCCGCGGTTGGCGTCAAATTGAAGAACATGTAGGTACCAAAACTGTAGTTCAGATTCGAAGCCATGCGCAGAAGTTCTTCTCTAAGATTGTTCGGGAATCTGATGGTAGCATTGAAAGTTCTATAAAACCAATTGACATACCTCCTCCTCGGCCAAAAAGGAAACCGTTACATCCATATCCCCGTAAATCAGTCGACTCTTTCAAAGGACACTCGAGTTTAAATGAAACAGAAAGATCTCCATCCCCAAACCTCTCAGCTGCAGTGAAAGATACCCAATCTCCGACCTCAGTGTTATCTGCATTTGGCTCAGATGCATTGGGGTCAGCATTTTCTCAGCAGACGAATAGATGTCTTTCGCCGAATTCTTGCACTACTGGCATGCACTCGGTTAGCTTATCACCTGTTGAAAAGGAAAATGATTGTATTACATCCAACTCATCTGAGGAGGAAGAGAAGGGATTTCAAGTTTCAGTCCCATCATTTACTGGTTTGAGCACAGACCTCTCCCTGAAGTCCGAGTTGACTTCCAAGGAAACTGGGAGTTTTACTGATGATGCAGCCAAAGAGCCACATGTCACAGGCATTAAGCTTTTCGGAAGAAATGTCTCCTTGGTAAATAATCAGAAGTCATTAAATGTAGATAAGGAGAACACTAGGTCAATTATATGTAAGTCTGCTAATGTGGATGATGTTGAAAATGAGAAGCTAGGCCAAGCATTGGTATCCAACAAACTAGATACACAATTATCAGTGGCCATGTCTAATAGTAACTGGTATACAATGCCTGATGGAGATAAAGTGAAACGCATGGAAAACCCAAAAGGTTGCTTCGCTGAATCGGTATCCGATGTTCCTTTACCACGATGGAGTTTATACCAAGGTCTTCCAGTTTTAAACCTTGGGGCATTTAACGAAAATCTAATTTCTACATCTCTTCGGCCCGCTTTGAATAAAATAATGAGAGAGAAGGAAAGTCCTTGTACCAATTCTAACGCTGAATCAGTTAGTGGAATGGAAAATGGAGACAAGAACTCGGATGCTGTTGATTCTCAATGTCAATCACATAACTCGGATGCTGTTGATTCTCAATGTCAATCACATCATGAGGGAGAAAGTGCCCTGCACAAGTCTCCAGGGGGGTTTGTAACATATAAAAGATGTTTAACTGATAGAGGTGCGAATACGTTTGTTGGATTGGAAGAAAGGAAGGGGCAGCGAGCTCGAGTGTGCTCATAG 1470 0.4156 MEMQDQVESTRSNNFITASDRHFNSCAKLENVVHLKDINSIGDNHTPKARKPYTITKQREKWTEEEHKKFLEALKLYGRGWRQIEEHVGTKTVVQIRSHAQKFFSKIVRESDGSIESSIKPIDIPPPRPKRKPLHPYPRKSVDSFKGHSSLNETERSPSPNLSAAVKDTQSPTSVLSAFGSDALGSAFSQQTNRCLSPNSCTTGMHSVSLSPVEKENDCITSNSSEEEEKGFQVSVPSFTGLSTDLSLKSELTSKETGSFTDDAAKEPHVTGIKLFGRNVSLVNNQKSLNVDKENTRSIICKSANVDDVENEKLGQALVSNKLDTQLSVAMSNSNWYTMPDGDKVKRMENPKGCFAESVSDVPLPRWSLYQGLPVLNLGAFNENLISTSLRPALNKIMREKESPCTNSNAESVSGMENGDKNSDAVDSQCQSHNSDAVDSQCQSHHEGESALHKSPGGFVTYKRCLTDRGANTFVGLEERKGQRARVCS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0028 489 MobiDBLite consensus disorder prediction 115 169 - -
Bisa03g0028 489 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Bisa03g0028 489 CDD SANT 61 104 IPR001005 -
Bisa03g0028 489 SMART sant 58 106 IPR001005 -
Bisa03g0028 489 MobiDBLite consensus disorder prediction 205 219 - -
Bisa03g0028 489 MobiDBLite consensus disorder prediction 401 455 - -
Bisa03g0028 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Bisa03g0028 489 PANTHER SWI/SNF COMPLEX-RELATED 19 330 - -
Bisa03g0028 489 MobiDBLite consensus disorder prediction 205 234 - -
Bisa03g0028 489 MobiDBLite consensus disorder prediction 125 142 - -
Bisa03g0028 489 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Bisa03g0028 489 MobiDBLite consensus disorder prediction 145 169 - -
Bisa03g0028 489 Pfam Myb-like DNA-binding domain 59 102 IPR001005 -
Bisa03g0028 489 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Bisa03g0028 489 FunFam protein REVEILLE 6 isoform X1 61 109 - -
Bisa03g0028 489 MobiDBLite consensus disorder prediction 401 439 - -
Bisa03g0028 489 SUPERFAMILY Homeodomain-like 53 107 IPR009057 -
Bisa03g0028 489 Gene3D - 61 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0028 Bisa-ChrBisa03 451470 454290 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bisa03g0028 Myb_DNA-binding 2e-13 CL0123