LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g0015	ATGGCAAACATGAACCAGAAAGCCTCTGTCTCTAAGGAACTCAATGACAGGCACATCCAGATCCTACATGGCCTTCTTAAGCTGCCTGAAAATAAGGAATGTGCTGACTGCCGAAACAAGGCACCAAGATGGGCAAGTGTGAACCTAGGAATTTTTATATGCATGCAATGTTCAGGAATTCACCGAAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACTACTTTGGATACATGGTTGCCCGAACAAGTCTCTTTCATGCAGTTCATGAGTAACGAGAAGTCAAATGAGTATTGGGAGGCAGAACTGCCACCAAATTTTGACAGAAATGGATGCGGACTTGAGAAGTTTATTCATACCAAGTATGTAGAGAAAAGATGGGCTAAAAGAGGTGAAGTACCGCCAGCTTCAAGGGCAGGTGAAATTATCGGTAACTTAAATGAGGCACCTGCTGGTAGGGCCAAGAGTGGCATTTCAAAGATCAATAGGAGACTTTCTCTTGAGGAAAGCATTCTTACAAGCCACACGGCACAGATCATGCCTCCGGTGTCAAGAACTCGTGGGGGATCTTTTGATATTGAAAAGAAGAGTTCTGCACCTCCAGTAAGGAGGCAACACCCGTCACTTGATTTTGATGAGTCCCCAGTAAACAATGGTACTGCTGACTTTTTCAGCTTGATTGGTGTCCATGATGGTCAAACGGACCCCATTACTGTATCTAGTACTCCTACTAGCTGGACAAAGTTTGATTGTAAGAAAATAATACTTATGTCACACATTATTTTTTGTAATCTTTCTTTTATTTTCCATTTTAGCTCATTGGATAAAAAGAGATCTTGGAGATTGTTTTGGCAAACAGTGAAAGTGCTTGGAGGTGTGTCGATAGTGTTTGAGGACAGGGCTTCCAATCATCAAGCTGAAGAGGGTTTGAAGACGGGGCTTCCAATCATCAAGCTGAAGGGGCCTCAGCAAACAACATCAAGAACCCAATTGCGAATTCACCAATCTTCCATCAAACCTGTTCCCCAACTTTCCTCCGATGCAAATGGATGGTGGAAAAGGCAGTTTTACCAGGATGGAGACCAAGCTCAGTTCGAGTGA	1101	0.4351	MANMNQKASVSKELNDRHIQILHGLLKLPENKECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVSFMQFMSNEKSNEYWEAELPPNFDRNGCGLEKFIHTKYVEKRWAKRGEVPPASRAGEIIGNLNEAPAGRAKSGISKINRRLSLEESILTSHTAQIMPPVSRTRGGSFDIEKKSSAPPVRRQHPSLDFDESPVNNGTADFFSLIGVHDGQTDPITVSSTPTSWTKFDCKKIILMSHIIFCNLSFIFHFSSLDKKRSWRLFWQTVKVLGGVSIVFEDRASNHQAEEGLKTGLPIIKLKGPQQTTSRTQLRIHQSSIKPVPQLSSDANGWWKRQFYQDGDQAQFE	366

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g0015	366	MobiDBLite	consensus disorder prediction	183	211	-	-
	Bisa03g0015	366	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	16	140	IPR001164	GO:0005096
	Bisa03g0015	366	Pfam	Putative GTPase activating protein for Arf	21	130	IPR001164	GO:0005096
	Bisa03g0015	366	CDD	ArfGap	25	122	-	-
	Bisa03g0015	366	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5	4	200	IPR044520	GO:0005096
	Bisa03g0015	366	SMART	arf_gap_3	16	134	IPR001164	GO:0005096
	Bisa03g0015	366	FunFam	stromal membrane-associated protein 1 isoform X1	4	133	-	-
	Bisa03g0015	366	PRINTS	HIV Rev interacting protein signature	50	67	IPR001164	GO:0005096
	Bisa03g0015	366	PRINTS	HIV Rev interacting protein signature	71	92	IPR001164	GO:0005096
	Bisa03g0015	366	PRINTS	HIV Rev interacting protein signature	31	50	IPR001164	GO:0005096
	Bisa03g0015	366	MobiDBLite	consensus disorder prediction	189	210	-	-
	Bisa03g0015	366	SUPERFAMILY	ArfGap/RecO-like zinc finger	20	129	IPR037278	-
	Bisa03g0015	366	Gene3D	Arf GTPase activating protein	2	133	IPR038508	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g0015	Bisa-ChrBisa03	295217	303147	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g0015	22	129	C2H2 Transcription Factor Family	AT4G05330	44.737	4.10e-25	102