Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g4004 ATGAACCCCTGTTTGATGGATTCAGCCCTGGAATTTTTGGTTCCGTCGTTGTGGGAGATCAAAGTTACATTAGCCACCTCTGTTTTTGTGATCCTCACCTATTGGTTTTTCACGTACACAACTAGAGAACTTGATGCTGATCGAGCGCTTGTTGACAATTCTGGGGATGCTTCCGACGACAAAGACAAGATAATCCAGTTCAAAGGAGAATCTCAGACCAATTCAGCATATTTGATCAAGTTGGAACTATTGGCTGCTAAGAATCTTGTGGGTGCAAATTTAAATGGCACATCAGATCCTTATGCTATAATCACATGTGGCAATGAAAAGCGATTCAGTTCCATGGTTCCTGGTTCAAGAAATCCTATGTGGGGTGAGGAGTTCAATTTCTCTGTTGACGAACTTCCTGTTCAGATTAACGTCACAATATATGATTGGGATATAATTTGGAAAAGTGCTGTTCTAGGTTCAGTGACTGTTCCAGTTGAAAGTGAAGGTCAAACTGGTGCAGTGTGGTATACATTAGATAGCCCATCAGGGCAGGTTTGTCTTCACATAAAAACAAGAAAGATGTCTGTAAATTCTTCCAGGATGAATGGCTATGGCGGAGCCAACAGTCGAAAGCCAACTGTTGTTCATCAAAAGCCAGGGCCTCTTCAAACAATATTCGGTCTTCTTCCAGACGAGGTTGTTGAACATAGTTATTCTTGTGCACTTGAAAGGTCATTTTTGTATCATGGTCGTATGTATGTCTCGGCGTGGCATATTTGCTTCCATTCTAATGTGTTCTCAAAGCAAATGAAGGTGGTTATTCCATTTGACGATATAGACGAGATTCGAAGGACTCAGCATGCATTTATTAATCCTGCTATAACAATTATTCTTCGCATGGGTGCTGGTGGACATGGTGTACCTCCTTTGGGAAGTCCTGATGGTAGAGTCAGATATAAGTTTGCATCATTTTGGAATAGAAATCATACATTTAGAAATCTACAACGTGCTGCAAAGAACTTCCGTGAAATGCTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCAGAACTGCGGGCACATAGCAGTTCTGTCAGAGGAAATAAGATATTGGATAAGGTTCCTGAAGAAAACATGGAAAAAACTGGAAAATCTCAACCTTTTGTCAAAGAAGAGGCTTTAACTGGTATATACAATGATGTTTTTCCCTCCACGCCTGAGCAGTTCTTTAACTTATTATTTCATGATGATTCAAAATTTACTAGCGAATATCGTTCAATACGAAAGGATACTAATCTTGTGATGGGACAGTGGCATACAGCAGATGAATATGATGGTCAAGTCAGAGAGATAACCTTCAGAACGCTTTGTAACAGCCCTATGTGCCCTCCAGACACGGCCATGACTGAATGGCAACATGTTGTTCTATCGCCAGATAAGAAAAAACTGGTGTTTGAGACTGTGCAACAGGCACATGATGTTCCATTTGGGTCCTATTTTGAGGTGCATTGTAAATGGAGTTTGGAGGCAATTAATGAAAGTTCAAGTTCATTAGACATAAAAGTGGGTGCACACTTTAAGAAATGGTGTGTGATGCAATCCAAAATCAAGGCAGGGGCTATCAACGAGTACAAGAAAGAAGTTGAGGTGATGCTAGAAGTAGCTCGTTCTTACGTAAAGTCCAATGCTTCTAATGGTGAGACTGACAAGGCGTCTTTGCATCCTGAAATTTTGGACAGCTCCTAA 1734 0.4083 MNPCLMDSALEFLVPSLWEIKVTLATSVFVILTYWFFTYTTRELDADRALVDNSGDASDDKDKIIQFKGESQTNSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWYTLDSPSGQVCLHIKTRKMSVNSSRMNGYGGANSRKPTVVHQKPGPLQTIFGLLPDEVVEHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFDDIDEIRRTQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHTFRNLQRAAKNFREMLEAEKKENAESELRAHSSSVRGNKILDKVPEENMEKTGKSQPFVKEEALTGIYNDVFPSTPEQFFNLLFHDDSKFTSEYRSIRKDTNLVMGQWHTADEYDGQVREITFRTLCNSPMCPPDTAMTEWQHVVLSPDKKKLVFETVQQAHDVPFGSYFEVHCKWSLEAINESSSSLDIKVGAHFKKWCVMQSKIKAGAINEYKKEVEVMLEVARSYVKSNASNGETDKASLHPEILDSS 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g4004 577 Pfam C2 domain 80 175 IPR000008 -
Bisa02g4004 577 ProSiteProfiles C2 domain profile. 60 175 IPR000008 -
Bisa02g4004 577 FunFam BAG-associated GRAM protein 1 isoform X2 218 337 - -
Bisa02g4004 577 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 77 187 IPR035892 -
Bisa02g4004 577 Pfam GRAM domain 220 285 IPR004182 -
Bisa02g4004 577 CDD PH-GRAM_C2-GRAM 228 336 - -
Bisa02g4004 577 SMART C2_3c 78 174 IPR000008 -
Bisa02g4004 577 Gene3D C2 domain 62 191 IPR035892 -
Bisa02g4004 577 PRINTS C2 domain signature 139 147 IPR000008 -
Bisa02g4004 577 PRINTS C2 domain signature 94 106 IPR000008 -
Bisa02g4004 577 PRINTS C2 domain signature 118 131 IPR000008 -
Bisa02g4004 577 Gene3D - 218 337 IPR011993 -
Bisa02g4004 577 SMART gram2001c 217 283 IPR004182 -
Bisa02g4004 577 ProSiteProfiles VASt domain profile. 389 559 IPR031968 -
Bisa02g4004 577 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 6 568 IPR044655 -
Bisa02g4004 577 CDD C2 79 175 - -
Bisa02g4004 577 Pfam VAD1 Analog of StAR-related lipid transfer domain 393 538 IPR031968 -
Bisa02g4004 577 Coils Coil 328 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g4004 Bisa-ChrBisa02 94390530 94401711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g4004 78 163 C2H2 Transcription Factor Family AT4G21160 25.581 3.08e-06 47.8