Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3975 ATGCTGCCTCCAACGAAATCAAGCAACCCGACCCAGGAAAGCGGCGGTACTTCTGAAGAGACAGAGGTCCCATCGAACAATCTTTGGGTTGGGAATTTGTCCTCTGACGTAACGCAGTCGGACCTCGTGGGCCGTTTCGCCAAGTTCGGCGCTATCGATAGCGTTACCCCGTATTCGGCGCAGTGCTACGGTTTTGTGTTCTTCAAGCGCATGGAAGATGCGATGGCAGCTAAGAATGCTTTACAAGGCACCCTTCTTCGGGGGAATTCCATGAAGATTGAATTTGCCAGACCGTATTTACAATCTTCAGTTGGGAGGGCGGATGGTCGACCCAGCAGTATTTTATGTATATATTATCCTTCTTCAGTTCAGATTGATAAGCAAATGCTCCATAATGCCATGATTTTATTTGGTGAAATTGAGAGAATAAAGTGTTATCCTTCAAGAAATTATGCGTTTGTGGAATTTAGGAGCTTGGATGAAGCTCGACGTGCTAAAGAAGGTCTTCAAGGCCGGCTGTTCAATGATCCTCAAATAATGATTATGTATTCAAGTGGGGAGCTTTCACCTGGGAAAGATTATCCTGGCTTCTACCCAGGAAATAAAGGGCCAAGACCTGACATGTTTTTTGGTGAGCATCAATTTCGACCGGTGCAGATGGATGTATTTGGTCATAATCATCCAATGGTTCTAAATAATTTTCCTGGACAGTTACCATTTGGTGGTATTATTCGGCCTAATGCACCAATGAGACCTTATGGTCCTCAGGGTAGTCAAGAACCTCTGATTCCAGGCCCCGAGTTAAATGATCTGGGTGCACACCATGGATATGATGGTGGCTCCAAAAGTCAGATGGGACCTCACTGGAATAGGCCATCACCTCCTGCTCTTGGGATGCTTCCTCTGTCGGGTACTAGGCCTACTACAGTATTCTCATCTGTTGTACGGGATGTATTTGACATAAACCAATGTCAGAGAGATCCCAAACGACCAAGGATAGATGGTGCTCTACTTGATAGTGCTTCATTTCCTTTAAGAAATTTTGAAGACCATGGTTTAAGACCAGAACAGTCATATAGGATTGAACCAGTTACTGATGGAGATGGTTCTGGTCCATATGTAAACATGCATGGGAACACCCACCTTGCTCCAGAGAGCTCAAGGATCACAGCTGGAGTACCTAGTCCTGTTCAACCTGATACTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGAACACCTGTTTGTCATGCTCGATGTCTTCCTGTTGGAAAAAAGATAGGGATTGAGTTCCCTGAAGTTGTTGATTGCACAGCAAGGACAGGATTGGATATGCTCACGAAACACTATGCTGATGCTATTGGTTTTGAAATTGTTTTGTTTCTGCCAGATAGCAAAGATGATTTTGCTTCATACACAGAATTCCTTCGCTACCTCAGCACAAATAACCGTGCTGGTGTTGCCAAATCTGTTGATGGAACTACCTTATTTTTGGTACCTCCTTCTGATTTTCTAACCAAAGTTCTGAAAGTCACAGGACCTGAACGTTTATATGGTGTGATTCTTAAGTTTCCACAAGTGCCAAGTGGCACACCAATGCAACAATCGTCCCATTTGCCTACATCATCAAGAATTTATATTGATAAGCAGCATGTACCTTATTCACAAGCTGAGTATGGTTTGATCCCTGCTAAGGAGGAGCAGGTTTTACCAATGGATCATAACCGATTGTTGCATGAGGAGTCTAAGATTCCTCCAAAACTGCTATCTCCAGTTACAAGTGCCCCCTCTTCAGTTCAGTCTGAACATCCAGATTATGCTTCAAGGAATACTGCTTCTGCATCCCAAACTGAAGTTACTTTAACACCTGAGCTTGTTTCCACTCTAGCCTCTTTAATTCCTTCAGCTTCACATTCATCTGCAACTGATGGTGCTATGTCAGCAGTAGGCTCAACTAGGAATCTTTCATTCCCCACTGTTGCACTTAGTGAGGGAAACCAATCTGTTTTAGAGAAAGATCCTCAAATTGCAGAAGCATCCAGTCATCCTCATCAACAGTTTGGGAGTATGTACAGTTTGCAGAGTCCTTACTATAACCTTCATCTATCTGCATCTACTCCTGGCCTCCCTTCTCAACTGGTCACTTGCAGTTCATATATTCAAGATCCTCATGCCAGCCAGCAGCTGCAGGGTACTGTTTCAACTAGACCCATTGATAATTCCATGATACCTTCTCAAAGTGGACAGATAGCTGTATCCCCCCAAGTCAGCAAGCAGTATGAAGTTGATGTCTGCCCCAGCGCTCATAAAGGCTATGGAGTGATGCAGGGAGCAGATGTTTCTGGCTTATTTTGTTCTCAGGTTTTCGAGCAACCTAATACTTATGGTGCCTCATATAATGAGGATTATGGTGCGTACCCTTCCCAGCAACAAGCTGTCATGCCCGATATAGCAGACAAAGTAAATGCAAACCTTGAGAAAAAGGAAGTTCAATCTTCTCTCTTTGGTACTGGTGAGGGCAATTCAGAAGTGGAGGCTGATAGGAACCAGAGATACCAAACCACACTACACTTTGCTGCTACCCTTCTCCGCCAAATACGGCAGCAGCAAACACAAGGAGGCATTCTATTAGTGGGGTCTTTTGGAATAGATTACATGGTTTGTTTTGGGCATTTGAAGAGAAAGTCAAATGTTGGCATCGGTAGTTTTAGGAGATTGATTGTGATTAGGCTGGATACTTTCTTTGAAACTACTTGA 2760 0.4384 MLPPTKSSNPTQESGGTSEETEVPSNNLWVGNLSSDVTQSDLVGRFAKFGAIDSVTPYSAQCYGFVFFKRMEDAMAAKNALQGTLLRGNSMKIEFARPYLQSSVGRADGRPSSILCIYYPSSVQIDKQMLHNAMILFGEIERIKCYPSRNYAFVEFRSLDEARRAKEGLQGRLFNDPQIMIMYSSGELSPGKDYPGFYPGNKGPRPDMFFGEHQFRPVQMDVFGHNHPMVLNNFPGQLPFGGIIRPNAPMRPYGPQGSQEPLIPGPELNDLGAHHGYDGGSKSQMGPHWNRPSPPALGMLPLSGTRPTTVFSSVVRDVFDINQCQRDPKRPRIDGALLDSASFPLRNFEDHGLRPEQSYRIEPVTDGDGSGPYVNMHGNTHLAPESSRITAGVPSPVQPDTDHIWRGIIAKGGTPVCHARCLPVGKKIGIEFPEVVDCTARTGLDMLTKHYADAIGFEIVLFLPDSKDDFASYTEFLRYLSTNNRAGVAKSVDGTTLFLVPPSDFLTKVLKVTGPERLYGVILKFPQVPSGTPMQQSSHLPTSSRIYIDKQHVPYSQAEYGLIPAKEEQVLPMDHNRLLHEESKIPPKLLSPVTSAPSSVQSEHPDYASRNTASASQTEVTLTPELVSTLASLIPSASHSSATDGAMSAVGSTRNLSFPTVALSEGNQSVLEKDPQIAEASSHPHQQFGSMYSLQSPYYNLHLSASTPGLPSQLVTCSSYIQDPHASQQLQGTVSTRPIDNSMIPSQSGQIAVSPQVSKQYEVDVCPSAHKGYGVMQGADVSGLFCSQVFEQPNTYGASYNEDYGAYPSQQQAVMPDIADKVNANLEKKEVQSSLFGTGEGNSEVEADRNQRYQTTLHFAATLLRQIRQQQTQGGILLVGSFGIDYMVCFGHLKRKSNVGIGSFRRLIVIRLDTFFETT 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3975 919 SUPERFAMILY RNA-binding domain, RBD 124 207 IPR035979 GO:0003676
Bisa02g3975 919 Gene3D - 3 103 IPR012677 -
Bisa02g3975 919 MobiDBLite consensus disorder prediction 584 620 - -
Bisa02g3975 919 Gene3D - 107 194 IPR012677 -
Bisa02g3975 919 SMART rrm1_1 114 182 IPR000504 GO:0003723
Bisa02g3975 919 SMART rrm1_1 27 94 IPR000504 GO:0003723
Bisa02g3975 919 Pfam SPOC domain 399 516 IPR012921 -
Bisa02g3975 919 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 178 IPR000504 GO:0003723
Bisa02g3975 919 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 91 IPR000504 GO:0003723
Bisa02g3975 919 CDD RRM_SF 28 94 - -
Bisa02g3975 919 CDD SPOC_FPA-like 404 524 - -
Bisa02g3975 919 PANTHER RNA RECOGNITION MOTIF-CONTAINING 15 867 - -
Bisa02g3975 919 SUPERFAMILY RNA-binding domain, RBD 18 106 IPR035979 GO:0003676
Bisa02g3975 919 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Bisa02g3975 919 MobiDBLite consensus disorder prediction 1 28 - -
Bisa02g3975 919 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 186 IPR000504 GO:0003723
Bisa02g3975 919 MobiDBLite consensus disorder prediction 592 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3975 Bisa-ChrBisa02 94074339 94082983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3975 7 181 Eukaryotic Initiation Factors Gene Family AT4G34110 29.412 8.90e-10 60.5