Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3956 ATGGACTCCGAGGATGATATGCATGATGCCAACGATGTCGAGTCCCTTGATGATGATTTCTACAGCGGTGAGACTGAGGAAGCTCCTATGGATTATTACAGCGACTACGATGATGATGCTGATGATTACTTTGATGATGCCGATGAATCCGACAAGATTGAGTCTCGTCGCCCCGAGCAAAATTTTACCGTCTTGAGGGAATCAGATATTAAGCAAAGACAGGAGGACGATGTCACGAGAGTAGCAACGGTTCTCTATATTTCACTAGTTGATGCAAGCATCTTACTTCGCCACTACAATTGGAATGTCAGTGAAGTGCATGAGGCATGGTTTGCTGATGAAGAACGTGTCCGAAGAACAGTTGGCATGTTGGAGAAGCCAGTTGTCCAGTTTCCTAATGCTAGGGAGCTTACTTGTGGCATCTGTTTTGAAACTTATCCGCGCTCACGGATTGAATCTACTGCTTGTGGCCATCCCTACTGCATCTCATGTTGGGAAGGATATATTGGCACAGCCATTAATGATGGTCCTGGATGTTTGATGCTGAGGTGTCCTGAGCCCTCTTGTGGTGCTGCTGTTGGTCAAAATATGATTAATCTATTAGCATCTGAGGAGGATAAACAGAAGTATTCTCGTTACCTTCTTAGATCCTATATTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACATTTGATGCTGGTAGTGGAAACTATGATGTTTCTTGCCTCTGTTCATATTGCTTTTGCTGGAATTGCACTGAGGAGGCTCACCGTCCAGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCCAATTCTAAGCCCTGTCCCAAGTGCAAGCGACCAATTGAAAAAAACCAGGGGTGCATGCACATGACATGTACGCCTCCTTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCGTGGTCAGACCATGGTGAAAGGACTGGTGGTTTCTATGCTTGCAATCGTTATGAGGCAGCTAAACAAGAGGGAGTGTATGATGAAGCTGAAAGAAGAAGAGAAATGGCAAAGAACTCCTTGGAGAGATACACACACTATTATGAGCGGTGGGCTAGCAATCAATCTTCGAGGCAAAAAGCTCTTGCAGATTTACATCAGATGCAAACTGTGCATATTGAGAAGCTTAGTGACACACAGTGCCAACCTGAGTCGCAGCTTAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAATGTAGGCGAGTGCTGAAGTGGACATATGCATATGGGTTCTATTTACCGGAGCATGAGCATGCTAAAAAACAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAATTGCAGCAATATCTCACTGCTGATGGCCCGTCTAAAGAATTTAATGACTTCCGGACAAAGCTAGCTGGATTGACCAGTGTGACTAGAAACTACTTCGAGAATTTGGTTAGGGCATTAGAGAATGGCTTATCTGATGTATATAGTAATGGAGCGGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGTAGCAGTAAGGGGAGAGGTGGAAGAGGAAAGGGAGCTACTCGAACCAACAAAATGACTGATGATTCTTGTTGGTATTGTGAGCACTGTACCTATGCAAATGCTGCTTCTGTTAACACGTGCCAGATGTGCCATCAACAGCGTCGATAA 1764 0.4444 MDSEDDMHDANDVESLDDDFYSGETEEAPMDYYSDYDDDADDYFDDADESDKIESRRPEQNFTVLRESDIKQRQEDDVTRVATVLYISLVDASILLRHYNWNVSEVHEAWFADEERVRRTVGMLEKPVVQFPNARELTCGICFETYPRSRIESTACGHPYCISCWEGYIGTAINDGPGCLMLRCPEPSCGAAVGQNMINLLASEEDKQKYSRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDEAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQQYLTADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVYSNGAASSKATSSKNAAGSSKGRGGRGKGATRTNKMTDDSCWYCEHCTYANAASVNTCQMCHQQRR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3956 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 219 IPR013083 -
Bisa02g3956 587 FunFam RBR-type E3 ubiquitin transferase 271 521 - -
Bisa02g3956 587 SUPERFAMILY RING/U-box 135 220 - -
Bisa02g3956 587 Coils Coil 349 376 - -
Bisa02g3956 587 CDD BRcat_RBR_ANKIB1 215 279 - -
Bisa02g3956 587 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Bisa02g3956 587 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Bisa02g3956 587 FunFam RBR-type E3 ubiquitin transferase 133 222 - -
Bisa02g3956 587 SUPERFAMILY Ran binding protein zinc finger-like 559 586 IPR036443 -
Bisa02g3956 587 SUPERFAMILY RING/U-box 209 277 - -
Bisa02g3956 587 CDD Rcat_RBR_ARI7-like 293 347 - -
Bisa02g3956 587 MobiDBLite consensus disorder prediction 1 58 - -
Bisa02g3956 587 Gene3D - 266 521 - -
Bisa02g3956 587 MobiDBLite consensus disorder prediction 526 540 - -
Bisa02g3956 587 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 GO:0008270
Bisa02g3956 587 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 GO:0008270
Bisa02g3956 587 SUPERFAMILY RING/U-box 289 337 - -
Bisa02g3956 587 ProSitePatterns Zinc finger RanBP2-type signature. 563 582 IPR001876 -
Bisa02g3956 587 SMART ibrneu5 274 344 IPR002867 GO:0008270
Bisa02g3956 587 SMART ibrneu5 208 270 IPR002867 GO:0008270
Bisa02g3956 587 MobiDBLite consensus disorder prediction 1 48 - -
Bisa02g3956 587 Pfam Ariadne domain 357 522 IPR045840 -
Bisa02g3956 587 MobiDBLite consensus disorder prediction 526 555 - -
Bisa02g3956 587 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 436 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3956 Bisa-ChrBisa02 93673455 93679145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3956 17 586 ARIADNE family AT1G65430 71.254 0.0 842