Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3869 ATGAACTCCGATATGGCTTCCCCGACGGCGTCGTATTGGTGCTATAGCTGCACGCGCTTTGTTCGCCTCTTGGGTCTGGACGACGTCGCTTGTCCGCACTGCCAAGGCGGCTTCGTTGAGGAGATCCACGGCCACAATTCTTCATCCGATCATCTTCTCAGCCCCTTTCCACCTACTATGTTCCCCGACGGAGCTCCCGGAGCCTACGATTTCAGCAGACAAGGCTTCCGCCGGAGACGCCGCAACGCCGGCAACAGATCTCCTTTTAACCCAGTAATCGTTCTCCGTGGGCCGGCCGATGCTGCCGGCGGTGATGGCGGTGGTGGTGATCAGGAGGAAAGCAGCTTCGAGTTGTTCTACGACGACGGAGATGGCTCCGGGCTCCGACCGCTGCCGCCGGCTATGTCTGAGTTCTTGTTAGGGTCGGGGTTTGAGCGGCTGCTGGAGCAGTTTGCCCAGATCGAGATGAACGGGTTCGGGCGACCCGAGAACCCGCCCGCTTCTAAGGCGGCTGTAGAATCTATGCCTACGGTTGAGATTGGGGAGACTCATGTGGGTGCCGATGCGCACTGTGCCGTGTGCAAAGAAGCGTTTGAGCTCGGTATGGAGGCGCGTGAAATGCCCTGCAAGCACATATACCATTCAGATTGCATCCTCCCGTGGCTTTCAATGCGCAATTCGTGTCCCGTGTGCCGCCACGAGTTGCCTTCTGATCGAAACCCGTTGGAAAGTAGAGTATCAGGGCAAATCGATGACGAAACTGTAGGGTTGACGATTTGGAGGCTACCAGGAGGCGGTTTTGCCGTCGGAAGGTTTTCTGGCGGTCGCAGAGCCGGCGAGAGTCATTTTCCTGTTGTGTACACAGAAATGGACGGTGGACTCAATACAAATGGAGTTCCTAGAACAATTTCCCGGGCAGCAAGAAGCACGAGAGTTAGAGAAAGTCGTGGATTTGGAAGAATTGTTCGCAGTTTCTTGTCCTTCTTTGGGAGACGCAGGTCGAGGTCAACTTCATCTTCGTCATCATCTTCATATTCTGGTTCCGAACATGAGTCCATGAGTATAAGCCGCAGCCATCCGAGTTCGATATTCAGTAGGAACTCGAGGAGGCGCAGCAGAACTTGGGTTTTGGAAGATTGA 1140 0.55 MNSDMASPTASYWCYSCTRFVRLLGLDDVACPHCQGGFVEEIHGHNSSSDHLLSPFPPTMFPDGAPGAYDFSRQGFRRRRRNAGNRSPFNPVIVLRGPADAAGGDGGGGDQEESSFELFYDDGDGSGLRPLPPAMSEFLLGSGFERLLEQFAQIEMNGFGRPENPPASKAAVESMPTVEIGETHVGADAHCAVCKEAFELGMEAREMPCKHIYHSDCILPWLSMRNSCPVCRHELPSDRNPLESRVSGQIDDETVGLTIWRLPGGGFAVGRFSGGRRAGESHFPVVYTEMDGGLNTNGVPRTISRAARSTRVRESRGFGRIVRSFLSFFGRRRSRSTSSSSSSSYSGSEHESMSISRSHPSSIFSRNSRRRSRTWVLED 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3869 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 238 IPR013083 -
Bisa02g3869 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 75 236 - -
Bisa02g3869 379 Pfam Ring finger domain 190 232 IPR001841 -
Bisa02g3869 379 CDD RING-H2_RNF126-like 191 232 - -
Bisa02g3869 379 Pfam Protein of unknown function (DUF1117) 255 369 IPR010543 -
Bisa02g3869 379 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Bisa02g3869 379 FunFam E3 ubiquitin-protein ligase RING1-like 153 238 - -
Bisa02g3869 379 MobiDBLite consensus disorder prediction 98 119 - -
Bisa02g3869 379 SUPERFAMILY RING/U-box 171 239 - -
Bisa02g3869 379 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Bisa02g3869 379 MobiDBLite consensus disorder prediction 334 365 - -
Bisa02g3869 379 SMART ring_2 191 231 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3869 Bisa-ChrBisa02 92759348 92760487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3869 130 243 C3H Transcription Factor Family AT5G01980 45.614 1.52e-27 111