Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3842 ATGGAGCTTTTGAAGCCTTCGCATCCTCCTCAGAAACACTTACCGACCGGAGACGCCATTTTTGGGTTCTCGCAGCCGATGAGCTTACCCTTTGGCTTGCAAGGCGCTGCGACCCCTCGAGTACCCGAGGCTATGACAGAATGTGGTGAAACCGTGCACGTAGCTGTAGGAAAATCGGTGGAAAAAGCCCTGAATTTGCTTCAATGGACTTTCACCCGCTTTCGGTGCTCACAAATTTGCATACTCCATGTTCATCAACCTTCCTCTCTGATCCCCACTCTGTTGGGAAAATTGCCAGCAACCCAAGCAAATCCTGAAGTCGTGGCTGCTTTTAGAAGAGAGGAAAGAGAACAGACCACTAGGCTTTTGGAAAATTACTTGAGCGTTTGCCGTGCAGCTAAGGTTAAGGCAACAAGTGTTGTAGCTGAAGCTGACCAGGTGCAGAAAGGGATTGTTGATTTAATTATCACGCATGGTATCAGGAAACTTGTTATAGGAGCAGTACCAGAAAATTGCATGAAGGTGAAAAGAAATTCCAGAAAAGCAAATTATGCTGCCAAGAATGCTCCCCAATTTTGTGAAATATGGTTTATCCACAAAGGTAGACACATATGGACAAGAGAAGCTTCTGAAGATCCTTGTTCTTTGTCTTCACATGCTCAACCCGAGATTGCAACCTCAGAGAGTTTGAGATCTAGGTCATTTCAATATGGTAAAAATGAATTATTCCAATCAGATTGTCTTCCATCAAATTCTGCTAGAATTGCAATCTGTACTGGAACTGGTAGTTGCTCTCAGAGTGAGATCCTTGAAACAGATGCAACCTCTTCATCCAAATCATCCAGTTGTACCTGTCATTGTTCTCCCCAAAGTTCTGCTGAGGTGTATTTAGAGACTTATTCAGATGCTGAGGAGGAAAGAGTTCGTAGTCAACTTACTGAAGCCGAACTAGAAGCTGAAGCCAAGACAGATGAGGCTTTTGCACAGCTATCAAAGTGCAAAAGGTTGGAAGCAGAAGCCATGGAGGCCATAAGAAAGGTCAATATGCTTGAATCTGCCCATGCATCTGAAGTAAAGCTAAGAAAGGAAGCAGAGAATACACTGAGAACCATAGTGCAGGAGCAACAAAAGCTCTTGGGTGAGAGTGAAGAAGTTACTAGTGTGCTGCAGAGGACCATGAGAAATATTGCTCTTCTGGACAATCGTGCACAGGAAGCAAATCGTAGGCGAGATGAAGCTGCAGATGAGCTATTACTAATTCAAGCATCCATCTCAACCCTGTGGCATGAAATGCAGCAGATCAGACGACAAAAAATGGAAGCCCTTCTCTGGCTTGAGCGGTGGAAAAGTCGGGGACAGGTTGGGGCTACGCACTGCCATGGGATCATAGGATTTTCTGAAGAATTACCAGAATTAGCAGAATTTTCATTGTCAGATCTTCAAAATGCTACTTGCAATTTTTCTGAGAGCTTCAAAATTGCGGAGGGAGGATATGGTTGTATTTATAAGGGGGAAATGTTGGGTAGAACTGTTGCTATAAGAAAGCTACATCCACATAACATGCAGGTACCAGCTGAGTTTCATCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATCTCTTGACATTGCTTGGTGTGTGCCCTGAAGCTTGGTCACTCGTGTACGAGTACCTGCCAAATGGGAATCTTCAAGACCACCTATTCCGAAAAAGCAATAATTCCCCCCTGACATGGAATAAACGGGCACGGATGATTGCTGAAATTGCTAGTGCTCTTGGTTTTCTGCACACTTCCAAACCTAAAACTATTGTCCATGGTGATCTGAAGCCTGAAACTATACTTCTTGATTCTGTTCTCAGTTGCAAGATTTGTGGATTTGGGTTCTGCAGGCTGGTGACAGAGGAGTCACTCTACCGTCCTAGTTTCAGCTTCAGCAATAAGCCAAAGGGTGTTTCCACATATACCGATCCAGAGTTTCAGAGAACTGGAATACTAGCACCAAAGTCTGATGTCTACTCCTTTGGACTCATCATTTTGCAACTCCTCACTGGTAGGATTCTTCCAGTTGGGTTAGCAAGTGAAGTCCGCAAAGCAATTTCGTGTGGAAAATTGTCTTCAATTTTGGATTCTTCAGCTGGAGAATGGCCTCCAGCTGTGGTAACACGATTGGTTGAACTGGGACTGCAGTGCTGTCAACCAAATGGTAGAGACAGACCAGATCTCACTCCTACTTTGGTGAGAGAACTAGAGCTATTACACGTTTCAGAAGACCGACCAGTGCCATCTTATTTCTTGTGTCCCATCCTTCAGGAAATAATGCGTGATCCTGAGGTTGCAGCAGATGGATTTACTTATGAAGGGGACGCTATACGTGAATGGCTGGACAATGGGCATGAAACTTCTCCTATGACCAATTTAAAATTGAGTCACTTGCATCTTACTCCCAATCATGCACTTCGTCTTGCGATCCAAGACTGGCTTTGCAAATCCTGA 2499 0.4446 MELLKPSHPPQKHLPTGDAIFGFSQPMSLPFGLQGAATPRVPEAMTECGETVHVAVGKSVEKALNLLQWTFTRFRCSQICILHVHQPSSLIPTLLGKLPATQANPEVVAAFRREEREQTTRLLENYLSVCRAAKVKATSVVAEADQVQKGIVDLIITHGIRKLVIGAVPENCMKVKRNSRKANYAAKNAPQFCEIWFIHKGRHIWTREASEDPCSLSSHAQPEIATSESLRSRSFQYGKNELFQSDCLPSNSARIAICTGTGSCSQSEILETDATSSSKSSSCTCHCSPQSSAEVYLETYSDAEEERVRSQLTEAELEAEAKTDEAFAQLSKCKRLEAEAMEAIRKVNMLESAHASEVKLRKEAENTLRTIVQEQQKLLGESEEVTSVLQRTMRNIALLDNRAQEANRRRDEAADELLLIQASISTLWHEMQQIRRQKMEALLWLERWKSRGQVGATHCHGIIGFSEELPELAEFSLSDLQNATCNFSESFKIAEGGYGCIYKGEMLGRTVAIRKLHPHNMQVPAEFHQEVQVLGSLQHPHLLTLLGVCPEAWSLVYEYLPNGNLQDHLFRKSNNSPLTWNKRARMIAEIASALGFLHTSKPKTIVHGDLKPETILLDSVLSCKICGFGFCRLVTEESLYRPSFSFSNKPKGVSTYTDPEFQRTGILAPKSDVYSFGLIILQLLTGRILPVGLASEVRKAISCGKLSSILDSSAGEWPPAVVTRLVELGLQCCQPNGRDRPDLTPTLVRELELLHVSEDRPVPSYFLCPILQEIMRDPEVAADGFTYEGDAIREWLDNGHETSPMTNLKLSHLHLTPNHALRLAIQDWLCKS 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3842 832 CDD STK_N 51 201 - -
Bisa02g3842 832 ProSiteProfiles U-box domain profile. 761 832 IPR003613 GO:0004842|GO:0016567
Bisa02g3842 832 PANTHER OS02G0152300 PROTEIN 52 826 - -
Bisa02g3842 832 SUPERFAMILY Protein kinase-like (PK-like) 471 751 IPR011009 -
Bisa02g3842 832 Coils Coil 333 353 - -
Bisa02g3842 832 ProSiteProfiles Protein kinase domain profile. 487 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa02g3842 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 762 832 IPR013083 -
Bisa02g3842 832 Gene3D Transferase(Phosphotransferase) domain 1 560 761 - -
Bisa02g3842 832 CDD RING-Ubox_WDSUB1-like 763 818 - -
Bisa02g3842 832 SMART Ubox_2 765 828 IPR003613 GO:0004842|GO:0016567
Bisa02g3842 832 Coils Coil 389 416 - -
Bisa02g3842 832 Gene3D HUPs 51 188 IPR014729 -
Bisa02g3842 832 Coils Coil 361 381 - -
Bisa02g3842 832 Coils Coil 300 325 - -
Bisa02g3842 832 Pfam Protein tyrosine and serine/threonine kinase 492 744 IPR001245 GO:0004672|GO:0006468
Bisa02g3842 832 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 54 169 - -
Bisa02g3842 832 Pfam U-box domain 762 831 IPR003613 GO:0004842|GO:0016567
Bisa02g3842 832 SUPERFAMILY RING/U-box 759 831 - -
Bisa02g3842 832 Gene3D Phosphorylase Kinase; domain 1 464 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3842 Bisa-ChrBisa02 92423262 92432263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3842 50 829 U-box Gene Family AT2G45910 37.670 2.96e-174 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Bisa02g3842 PK_Tyr_Ser-Thr 2.7e-32 CL0016