Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3841 ATGGCAGACGCTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTTAAGGCTGGATTCGCTGGAGATGATGCTCCAAGGGCCGTGTTCCCTAGCATTGTTGGTCGTCCACGTCACACTGGTGTGATGGTTGGCATGGGCCAGAAAGATGCATATGTTGGAGATGAAGCTCAGTCCAAGCGTGGTATATTAACCCTGAAATATCCCATTGAGCATGGTATTGTGAGTAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTCCGTGTGGCCCCAGAGGAGCACCCAGTTTTACTCACTGAAGCACCCCTCAACCCAAAGGCTAACCGTGAGAAAATGACACAAATTATGTTTGAGACATTCAACACACCTGCCATGTATGTTGCCATCCAGGCTGTTCTGTCCTTGTATGCCAGTGGCCGAACAACTGGTATTGTTCTGGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATCTATGAGGGGTATGCCCTGCCCCATGCCATCCTGCGTCTTGACTTGGCAGGGCGCGACCTCACTGATGCCTTAATGAAAATCCTCACTGAGCGTGGTTATTCCTTCACTACCACAGCTGAGCGTGAAATTGTGAGGGATGTGAAGGAAAAACTGGCTTATATTGCCCTTGACTATGAACAGGAGCTTGAAACTGCAAAGACAAGCTCTGCTGTTGAGAAGAGCTATGAGTTGCCTGATGGACAGGTCATTACCATTGGCGCTGAGCGCTTCCGATGTCCAGAAGTCCTCTTCCAGCCATCCATGATTGGAATGGAAGCTTCAGGCATTCATGAAACCACATACAACTCTATTATGAAGTGCGATGTGGATATCAGGAAGGACTTGTATGGAAACATTGTCCTTAGTGGTGGATCGACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAGGAAATCACTGCACTGGCCCCGAGCAGCATGAAGATCAAGGTGGTTGCTCCACCAGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCCATCTTGGCTTCTCTCAGCACTTTTCAACAGGTACCTGTTCTTTTAATGATGCTATCAACTGTAATGTGGATTGCAAAAGCAGAGTACGATGAGTCTGGTCCTTCAATTGTGCACAGGAAATGCTTTTAG 1167 0.4816 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEASGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVPVLLMMLSTVMWIAKAEYDESGPSIVHRKCF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3841 388 PRINTS Actin signature 63 85 IPR004000 -
Bisa02g3841 388 PRINTS Actin signature 142 161 IPR004000 -
Bisa02g3841 388 PRINTS Actin signature 51 62 IPR004000 -
Bisa02g3841 388 PRINTS Actin signature 117 130 IPR004000 -
Bisa02g3841 388 PRINTS Actin signature 28 37 IPR004000 -
Bisa02g3841 388 PRINTS Actin signature 238 254 IPR004000 -
Bisa02g3841 388 SUPERFAMILY Actin-like ATPase domain 149 388 IPR043129 -
Bisa02g3841 388 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Bisa02g3841 388 PANTHER ACTIN 9 381 IPR004000 -
Bisa02g3841 388 Pfam Actin 5 388 IPR004000 -
Bisa02g3841 388 ProSitePatterns Actins signature 2. 369 377 IPR004001 -
Bisa02g3841 388 FunFam Actin, muscle 182 273 - -
Bisa02g3841 388 FunFam Major actin 260 340 - -
Bisa02g3841 388 Gene3D Actin; Chain A, domain 4 182 273 - -
Bisa02g3841 388 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Bisa02g3841 388 Gene3D - 140 340 - -
Bisa02g3841 388 SMART actin_3 7 388 IPR004000 -
Bisa02g3841 388 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Bisa02g3841 388 Gene3D - 10 382 - -
Bisa02g3841 388 FunFam Actin, alpha skeletal muscle 3 177 - -
Bisa02g3841 388 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3841 Bisa-ChrBisa02 92410536 92412476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3841 1 388 Cytoskeleton Gene Families AT3G12110 94.330 0.0 760