Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3838 ATGGTGTGGAATCTGACCGCTGCCCGAACCACCTTCTCTGGGGAAGGTGGCGCAGGGCTAGAGGCGAAGCACCTTCTCTACAGAAGAAGAAGAGTGGAAGGGATGGGTCAGGGTCTGAGCTGCGCCAGTGGCCACGAACATGGCCTCTTCACTGCTGTGCAGCACGGGGACATCGCAACTCTTAGAAATCTCTTGCAGAGAGAGCCAAGTCTTATGCACCAGACTACTGTCTACGATCGCCATTCTGCGCTTCATATAGCCGCTGCTAATGGCCAGATCGAGATCCTGTCGATGCTGTTAGGTGGATCTGTTAGTCCAGATGTTTTGAATCGGCAAAAGCAGACTCCGCTCATGTTGGCTGCAATGCACGGAAAGATCGCCTGTGTGAAAAAACTCCTCGAAGTTGGAGCTAATGTATTGATGTTTGATTCGTTTAACGGTAGAACCTGCTTGCACTACGCTGCCTACTATGGTCATTCTTCTTGTCTTGAAGCAATTCTTTCTGCTGCACAATCTAGTCCAGTGGCTGCTTCTTGGGGATTTGCTCGGTTTGTGAATATTAGAGATGGTAGGGGTGCAACGCCATTGCACTTGGCAGCCCGTCAGAGACGGCCTGGATGTGTGCACATTCTATTAGATAATGGAGCTCTTGTCTCTGCTTCAACAGGCGGATATGGCTGTCCTGGGAGCACTCCTCTTCATTTAGCAGCCAGAGGGGGATCTTTAGATTGCATCCGTGAACTGCTGGCGTGGGGTGCAGATCGTATTCAACGTGATGCCTCTGGGCGGATACCATATGTAGTTGCTCTGAAACACAAACATGGAGCATGTGCAGCATTGCTAAATCCAACATCTGCTGAACCTCTTGTCTGGCCTTCACCTTTGAAGTTCATCAGTGAGCTTAAACCGGATGCCAAAGCATTATTGGAACGGGCCTTGATGGATGCAAACAGGGAAAGGGAGAAAAATATATTGAAAGGAAGTACTTACTCTCTTCCATCTCCATCACATTCTGATGACCGGGTGGATGACAGTATCTCTGAGGCCAGTGAAACGGAATTGTGCTGCATCTGCTTTGAGCAGGTATGCACAATTGAAGTTCAAGACTGTGGCCACCAGATGTGCGCACAATGCACTCTAGCCCTCTGTTGCCACAACAAGCCCAATCCTGCCACTGCTTGCCTTACCCCACCAGTTTGTCCATTTTGCCGAAGCACCATAGCTAGACTGGTGGTTGTGAAGATAGAAAGTCATGATGACACAGATCTAGATGCTTGTGATATCAGTTCTTCCAAGCTAAGCAAGTCAAGGCAATCCCGAAACTTGAACGAGGGTGGCAGCAACAGCTTCAAGGGACTATCATTTGGAAAGATGGGTGGCCGCAGTTCTGGGAGGATTGCTACTGAAAATCAGTGGGTTGATAAAGAGTGA 1431 0.492 MVWNLTAARTTFSGEGGAGLEAKHLLYRRRRVEGMGQGLSCASGHEHGLFTAVQHGDIATLRNLLQREPSLMHQTTVYDRHSALHIAAANGQIEILSMLLGGSVSPDVLNRQKQTPLMLAAMHGKIACVKKLLEVGANVLMFDSFNGRTCLHYAAYYGHSSCLEAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPGCVHILLDNGALVSASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRIQRDASGRIPYVVALKHKHGACAALLNPTSAEPLVWPSPLKFISELKPDAKALLERALMDANREREKNILKGSTYSLPSPSHSDDRVDDSISEASETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTIARLVVVKIESHDDTDLDACDISSSKLSKSRQSRNLNEGGSNSFKGLSFGKMGGRSSGRIATENQWVDKE 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3838 476 CDD RING-HC_XBAT31-like 347 411 - -
Bisa02g3838 476 SMART ANK_2a 112 141 IPR002110 GO:0005515
Bisa02g3838 476 SMART ANK_2a 146 176 IPR002110 GO:0005515
Bisa02g3838 476 SMART ANK_2a 79 108 IPR002110 GO:0005515
Bisa02g3838 476 SMART ANK_2a 228 257 IPR002110 GO:0005515
Bisa02g3838 476 SMART ANK_2a 191 220 IPR002110 GO:0005515
Bisa02g3838 476 SMART ANK_2a 44 73 IPR002110 GO:0005515
Bisa02g3838 476 Pfam Ankyrin repeats (many copies) 229 266 IPR002110 GO:0005515
Bisa02g3838 476 ProSiteProfiles Ankyrin repeat region circular profile. 112 139 - -
Bisa02g3838 476 MobiDBLite consensus disorder prediction 437 476 - -
Bisa02g3838 476 PANTHER HOMEOBOX PROTEIN WARIAI 55 400 - -
Bisa02g3838 476 ProSiteProfiles Zinc finger RING-type profile. 355 404 IPR001841 -
Bisa02g3838 476 SUPERFAMILY RING/U-box 354 409 - -
Bisa02g3838 476 ProSiteProfiles Ankyrin repeat region circular profile. 228 254 - -
Bisa02g3838 476 Pfam Ankyrin repeat 81 108 IPR002110 GO:0005515
Bisa02g3838 476 SUPERFAMILY Ankyrin repeat 49 284 IPR036770 -
Bisa02g3838 476 ProSiteProfiles Ankyrin repeat region circular profile. 191 216 - -
Bisa02g3838 476 Gene3D - 178 284 IPR036770 -
Bisa02g3838 476 ProSiteProfiles Ankyrin repeat profile. 79 111 IPR002110 GO:0005515
Bisa02g3838 476 ProSiteProfiles Ankyrin repeat region circular profile. 79 111 - -
Bisa02g3838 476 Pfam Ankyrin repeats (3 copies) 117 218 IPR002110 GO:0005515
Bisa02g3838 476 ProSiteProfiles Ankyrin repeat profile. 228 260 IPR002110 GO:0005515
Bisa02g3838 476 Gene3D - 44 177 IPR036770 -
Bisa02g3838 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 422 IPR013083 -
Bisa02g3838 476 ProSiteProfiles Ankyrin repeat profile. 112 144 IPR002110 GO:0005515
Bisa02g3838 476 ProSiteProfiles Ankyrin repeat profile. 191 223 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3838 Bisa-ChrBisa02 92361975 92364842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3838 68 281 Miscellaneous Gene Families AT5G02620 27.928 3.72e-08 53.9