Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3837 ATGGATCTGGTAGTTCGAGCAGCCATGGAGGAGGACAAAGCAGCTATAGCACAGAGCTCGATTGACTTGGTGAATGACATAGCTGCGATCTCGGACTATAGGAGCACGGTCAAGAAGCAGTACTGCAATTTGGCGAGGAGGTTGAAGTTGTTGACTCCAATGTTCGAAGAGATTAGGGACAGCAAAGAGGCGTTCCCTGAAGAGACTTTGAAAGCTTTGGTTTCCTTCAAGGAGGCTTTGGAATCGGCCAAGGAAATTCTCAGATTCGGGAGCGAGGGAAGCAAGATTTATATGGTCTTAGAGAGGGACCAAATTGTGAATCAATACCAAGAGGTGACAGCTCAATTAGAACAAGGGTTGAGTGGGATTCCATATGATAAACTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTAGCTCAGTTCAGAAGAGCCAAAGGAAGGGTTGATGCACCTGATGACGAGTTGTATGAGGATCTCTTGTCACTTTATGATAAGAGCAGTGATGCAGCTACAGATCCAGCTGTTCTGAGGAGATTAGCTGAAAAACTGCAATTGATGGGTATATCTGATCTTACACAAGAGTCACTAGCTTTGCATGAGATGGTGGCAACAAGTGGTGGGGATCCAGGGGCAAGCATTGAGAAGATGTCAATGTTATTGAAAAAAATAAAGGATTACGTGCAAACTGAGAATCTTGTCACAGATGATAATGGAGGAAAAGGCCCTTCTTCAAGTAGCAGAAGACAAGGGCTAAGTGATAAGGCTCATCAAGCCCCCATTATTCCTGATGATTTTCGATGTCCAATTTCCCTGGAATTGATGAAGGATCCTGTAATTGTTTCAACGGGACAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTGGAAGCAGGGCATGGGACCTGCCCAAAAACACAGCAATCCCTTACTAATACTGATCTCACACCTAATTATGCTTTACGAAGCCTCATAGCACAGTGGTGTGAATCCAATGGCTTAGAACCTCCAAAACGACCCAGTAGTTCCCGTCCTAGTAAGTCAGCATCTGCCTGCTCGCCGGCTGAGCGTAGTAAAATTGAGAATCTCCTCCGCAAGCTTACATCTGGTAATCCCGAAGACCAGAGATCAGCTGCAGGTGAGATCCGCCTTCTTGCAAAGCGCAATGCTGATAATCGTGTGGCCATTGCTGAAGCTGGAGCAATACCTCTCCTTGTTGGCCTCCTCTCCATGCCTGACTCCCGAACTCAAGAGCATGCTGTGACAGCACTTTTGAATCTTTCCATTTGTGAAAACAACAAGGGAAGTATCATATCTTCTGGGGCAGTTCCTGGTATAGTTCATGTGCTCAAGAAGGGCAGCATGGAAGCTCGGGAAAATGCAGCAGCAACACTTTTCAGCCTTTCAGTTATTGATGAAAATAAGGTTACCATCGGATCTTCAGGAGCCATCCCACCACTAGTGACACTGCTCAGTGAGGGTAACCAAAGGGGTAAGAAGGATGCTGCAACAGCACTCTTCAATCTGTGCATATACCAAGGTAACAAGGGGAAGGCAGTGAGGGCTGGTGTTGTTCCAACACTGATGCGACTGCTGACAGAACCTGGTGGGGGAATGGTTGATGAAGCATTGGCCATATTGGCAATATTGGCTAGCCATCCTGAAGCGAAGGCTGCCATTGGTGCTGCAGTGGCAGTGCCAGTTTTGGTAGAGGTTATTGGGAATGGAACCCCAAGGAACAAAGAGAATTCAGCAGCTGTTTTAGTACACCTATGTTCTGGAGATCCGCAATATCTGGCACAAGCTCAGGATCTCGGGGTGATGGGTCCGTTGATGGATCTGGCTCAAAATGGCACAGACAGAGGTAAAAGAAAGGCTACACAATTGCTGGAGCGATTGAGCAGGTTCCTTGATCAGCAGCAGCAGCAGCAGCATGAAGTTCAAACACAGACTGAGCTTCAAACTCAGAATCAGGATATACGACCGCCTTCCCCCTCCATTACTAACCTTGTTGATTGCTGA 2031 0.4663 MDLVVRAAMEEDKAAIAQSSIDLVNDIAAISDYRSTVKKQYCNLARRLKLLTPMFEEIRDSKEAFPEETLKALVSFKEALESAKEILRFGSEGSKIYMVLERDQIVNQYQEVTAQLEQGLSGIPYDKLDISDEVKEQVELVLAQFRRAKGRVDAPDDELYEDLLSLYDKSSDAATDPAVLRRLAEKLQLMGISDLTQESLALHEMVATSGGDPGASIEKMSMLLKKIKDYVQTENLVTDDNGGKGPSSSSRRQGLSDKAHQAPIIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQSLTNTDLTPNYALRSLIAQWCESNGLEPPKRPSSSRPSKSASACSPAERSKIENLLRKLTSGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSMPDSRTQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGNQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGGGMVDEALAILAILASHPEAKAAIGAAVAVPVLVEVIGNGTPRNKENSAAVLVHLCSGDPQYLAQAQDLGVMGPLMDLAQNGTDRGKRKATQLLERLSRFLDQQQQQQHEVQTQTELQTQNQDIRPPSPSITNLVDC 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3837 676 MobiDBLite consensus disorder prediction 339 358 - -
Bisa02g3837 676 SUPERFAMILY ARM repeat 363 644 IPR016024 -
Bisa02g3837 676 Pfam Armadillo/beta-catenin-like repeat 392 431 IPR000225 GO:0005515
Bisa02g3837 676 Pfam Armadillo/beta-catenin-like repeat 475 513 IPR000225 GO:0005515
Bisa02g3837 676 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 526 568 IPR000225 GO:0005515
Bisa02g3837 676 SMART arm_5 598 638 IPR000225 GO:0005515
Bisa02g3837 676 SMART arm_5 515 555 IPR000225 GO:0005515
Bisa02g3837 676 SMART arm_5 556 596 IPR000225 GO:0005515
Bisa02g3837 676 SMART arm_5 392 432 IPR000225 GO:0005515
Bisa02g3837 676 SMART arm_5 474 514 IPR000225 GO:0005515
Bisa02g3837 676 SMART arm_5 433 473 IPR000225 GO:0005515
Bisa02g3837 676 FunFam RING-type E3 ubiquitin transferase 264 338 - -
Bisa02g3837 676 FunFam RING-type E3 ubiquitin transferase 539 657 - -
Bisa02g3837 676 MobiDBLite consensus disorder prediction 645 676 - -
Bisa02g3837 676 SUPERFAMILY RING/U-box 265 341 - -
Bisa02g3837 676 ProSiteProfiles U-box domain profile. 264 338 IPR003613 GO:0004842|GO:0016567
Bisa02g3837 676 FunFam RING-type E3 ubiquitin transferase 13 126 - -
Bisa02g3837 676 MobiDBLite consensus disorder prediction 236 256 - -
Bisa02g3837 676 SMART Ubox_2 268 331 IPR003613 GO:0004842|GO:0016567
Bisa02g3837 676 MobiDBLite consensus disorder prediction 236 261 - -
Bisa02g3837 676 CDD MLKL_NTD 21 146 - -
Bisa02g3837 676 PANTHER U BOX DOMAIN-CONTAINING 36 637 - -
Bisa02g3837 676 Pfam U-box domain 265 335 IPR003613 GO:0004842|GO:0016567
Bisa02g3837 676 Gene3D - 349 673 IPR011989 -
Bisa02g3837 676 Coils Coil 626 646 - -
Bisa02g3837 676 Gene3D - 14 123 IPR036537 GO:0007166
Bisa02g3837 676 FunFam RING-type E3 ubiquitin transferase 348 499 - -
Bisa02g3837 676 MobiDBLite consensus disorder prediction 335 360 - -
Bisa02g3837 676 CDD RING-Ubox_PUB 266 318 IPR045210 -
Bisa02g3837 676 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 403 445 IPR000225 GO:0005515
Bisa02g3837 676 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 485 527 IPR000225 GO:0005515
Bisa02g3837 676 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 338 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3837 Bisa-ChrBisa02 92296160 92304372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3837 9 645 U-box Gene Family AT3G46510 73.281 0.0 954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa02g3837 02 92296160 92304372 Bisa02g3837 02 92296160 92304372 ECH