Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3789 ATGATTTTTTCAAAAGTAAAAGCTAGTAATCTGATACGGCCAATTTCATTGCCCTGTTATTCCAACCAAACCCAGCCTCAGCTATTTCGAATTCTTCATGTCAAGAGTGTCCAAGCCAAACCCCCCTACAAAAGATCTCAAAACTCTAGTTCAAAGCTTCGAAGGTGCATACCTTTCATCACCCAAGTTAAAGAAGCAAAAGACCCGGAAGAAGCCTTGTCTCTCTTTCACGAGTACAATGAACAGGGATTCAGGCACGATTACCCCTCCTATGCCGCATTACTCTACAAATTGGCTCGATCTAGAAGCTTTACTGCTGTTGAAACTATTCTTACTCATATTCAAGACACAGGCATACACTGCAAAGAAACTGTTTTCATTGCGTTGTTTCAGCATTATGGGAAAGCCCAGCTTCCTGAAAAGGCTATCGAACTTTATAATAGAATGCCTCAGTTCAATTGTGTCCGCACATTGCAGTCCTTCAATGCTCTTCTTAATGTTTTAATTGACAATCATCGGTTTACCGAAGCGAGTGATACTTTTAGAGGATCATATAAAATGGGTTTTCGCCCAAACACAGTTTCCTTCAACATAATGATCAAGGGATGGTTGGCAAAGGATGAGTTGGATAAAGCATCTGATGTGTTTGGTGAAATGCTGGAGAAGAAAGTACAACCAAGTGTCGTGACGTATAATAGTCTCATCGGGTTCTTGTCTAGAAAGGGTGATTTAAGTAAAGCGATGACATTGCTAGAGGATATGACCCAGAAAGGAAAATACCCTAATGAAGTAACTTATGCACTGTTGATGGAGGGCTTGTGCTCTGTGGACAAGTACGAGGAAGCTAGGAAGCTTATATTTGATATGGCATATCGAGGATGCAAACCTCGGCTTGTCAATTTTGCTGTTTTGATGAATGATCTGGGGAAGAGAGGAAAGATTGAGGAGGCAAAATATTTACTTCATGAGATGCGAAAAAGGCACTTCAAGCCAGATGTTGTAATCTACAATATATTAATAAATTACCTATGCAAGGAAGGTAAGACAGCAGAAGCTTACAAAGTCTTGATTGAGATGCAGATTAAGGGTTGTGAGCCAAATGCTGCTACATACCGGATGATGGTTGATGGTTTCTGCCAAGTTGGCGACTTTGAGGCAGGTCTGAATGTTTTGAATGCAATGCTAGTAAGTAAACACTGTCCACGTTCTGAAACATTTAATTGTTTGGGTGTGGGCCTATTGAAGTGTGGGAGGATTGATGGTGGTTGCTTTGTCTTGGAAGAGATGGAGAAGAGAAACATGCGATTTGATTTAGAGAGTTGGCAAACTATTGTGAAGTTTGCTTGTGGTGAGGATAAAAATGCACATCAGCTTATAAATGACCTTACATCCATTGATCAATTGCATTAG 1410 0.4043 MIFSKVKASNLIRPISLPCYSNQTQPQLFRILHVKSVQAKPPYKRSQNSSSKLRRCIPFITQVKEAKDPEEALSLFHEYNEQGFRHDYPSYAALLYKLARSRSFTAVETILTHIQDTGIHCKETVFIALFQHYGKAQLPEKAIELYNRMPQFNCVRTLQSFNALLNVLIDNHRFTEASDTFRGSYKMGFRPNTVSFNIMIKGWLAKDELDKASDVFGEMLEKKVQPSVVTYNSLIGFLSRKGDLSKAMTLLEDMTQKGKYPNEVTYALLMEGLCSVDKYEEARKLIFDMAYRGCKPRLVNFAVLMNDLGKRGKIEEAKYLLHEMRKRHFKPDVVIYNILINYLCKEGKTAEAYKVLIEMQIKGCEPNAATYRMMVDGFCQVGDFEAGLNVLNAMLVSKHCPRSETFNCLGVGLLKCGRIDGGCFVLEEMEKRNMRFDLESWQTIVKFACGEDKNAHQLINDLTSIDQLH 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3789 469 Gene3D Tetratricopeptide repeat domain 59 208 IPR011990 GO:0005515
Bisa02g3789 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Bisa02g3789 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Bisa02g3789 469 NCBIfam pentatricopeptide repeat 194 227 IPR002885 -
Bisa02g3789 469 NCBIfam pentatricopeptide repeat 127 156 IPR002885 -
Bisa02g3789 469 NCBIfam pentatricopeptide repeat 370 401 IPR002885 -
Bisa02g3789 469 NCBIfam pentatricopeptide repeat 334 368 IPR002885 -
Bisa02g3789 469 NCBIfam pentatricopeptide repeat 229 263 IPR002885 -
Bisa02g3789 469 NCBIfam pentatricopeptide repeat 264 296 IPR002885 -
Bisa02g3789 469 NCBIfam pentatricopeptide repeat 302 333 IPR002885 -
Bisa02g3789 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Bisa02g3789 469 Pfam PPR repeat 303 328 IPR002885 -
Bisa02g3789 469 Pfam PPR repeat 128 154 IPR002885 -
Bisa02g3789 469 Pfam PPR repeat 194 223 IPR002885 -
Bisa02g3789 469 Pfam PPR repeat 405 433 IPR002885 -
Bisa02g3789 469 Gene3D Tetratricopeptide repeat domain 209 325 IPR011990 GO:0005515
Bisa02g3789 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Bisa02g3789 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Bisa02g3789 469 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 64 360 - -
Bisa02g3789 469 Gene3D Tetratricopeptide repeat domain 326 399 IPR011990 GO:0005515
Bisa02g3789 469 Pfam PPR repeat family 331 380 IPR002885 -
Bisa02g3789 469 Pfam PPR repeat family 226 275 IPR002885 -
Bisa02g3789 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Bisa02g3789 469 SUPERFAMILY TPR-like 162 356 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3789 Bisa-ChrBisa02 91508762 91510171 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3789 46 462 Miscellaneous Gene Families AT4G11690 26.402 1.14e-42 156