Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3698 ATGGCGGAAACTGCTAATAGTGAACTTTCACTTCCTTGCTCTAAAACCCTAAACCCTTCCGATCCAATCAACGGCTCTCCTACGCATCAGGCGGCCACCGAAGCAGAAGACCTTCAAATCCATCATGTGACTGAGACTGAGACTTCGAGTGGTCAGCCTTCCGACGATGTCGTTTCGGGTGACAAACGGAAGAGGGAGGATTTGGAGTCAGGGGACGCAGATCCTTCCCTCAATCCGTTGTGGAAAACCAGCCTCTGTTCTTTTTTCCGGCGCCAAGGTGGCTCCTGTAGTCATGGCAGTGCGTGCCGCTACGCCCACGGCGAAGAGGAACTTCGCCCTCGCCCCGATAACACATGGGACCCAACGTCTGAGCGGGCAAAGAAGGCGATGAAAGCCGATACGGGCGAGAAATGCGATGTTTCCATGGGTGTAATGATGACTGAAGTTGTAGTTGATGATGCTGACGCCGAGGATGATGATGGTTCCGATCATACGCTTAGCAAATGCTTGGTGCATTTGCCAAGGAAGTGGGCCTCCGATAATTTGAGGAATTTTCTCAATGAGGAGGGTATATCTTTTAAATTTGCGAAGAAAAAGAAAGGTATGTTGGTAGGATTCATCACTTTTGAAGATCAAGAACAGTTGAAGAGCTCATCAAAGGAGCTGGAAGGAAAATCAATTGGCAGCAGAAGGCTAAAGGTTGCAGATGTCATTCCCCGATCATTTGAAAAGAAAAATAGCTCAAATGTCACTTTATGCCAAGAATCTGTACAAAATGCAGATGATGCATCAGCCAAGGAAAATACTAGCAATGATGTTCCCTTAAAAGGGCATGCGGATGGTGAGACAAATGGTGCCAATTTGGCATCTGACAATTCCATGTCAAAGACAAGAAGCCTACGTGATGTAGTGACTCCTCTAGCTCATATGGCCTATGTCGATCAGTTAGAGCACAAGAAAAGCTCTCTCATGCAGATTCTTAAAAGACTTACTAGAAATGCTCGTAAGGCTTGTCCAAATGGCATTTCTCTTCCTGAGTGGATTCTCAAGTCTAGGGACATAGGTGGACTTCCTTGCCAACTGGAGGGTATTATTGGATCACCAATTGTAAATGGATATCGTAACAAGTGTGAATTTTCAGTTGGATATTCTCTAGAAGGAAAAATAACAGTAGGATTCATGCTTGGAAACTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCTGTGGACTGCCCAAATGTCTCTAAAATTGGTCTCCAGTATGCTTCTATCTTTCAGGAATTTCTGCAGCATTCAAACTTGCCAGTTTGGAACAGATTTAAGAATAGCGGATTTTGGCGTCAATTGACAGTTCGAGAAGGGAGGACAAATGGGAAGGTTTCTGATGCTGAAAATTTTGGTGGCATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTAAGGGATTTGATGATGAGATGGTAACTGGTGAATTTGAGAAACTTAAACAGGCATTTGTTGTGGCAGCTACTGCATGTTCTCCACCATTGCCTCTCACAGCTCTGGTTGTCCAGGATCACCAAGGAATATCCAATGTGGCACCCACTGATGCGCCACTGCGCTCACTTCTCATTCCTAAAGCTGTTGGTGATAGAATGGATGAAAACAATAGTGCCATGGATGCAAGAATTCATGATTATATTAGCAATCTCCAATTCTCTATATCTCCAACAGCATTTTTCCAGGTTAACACACTAGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGCCCTGATACATTGCTATTTGATATATGTTGTGGGACTGGAACAATTGGCCTGACCTTAGCACATCGTGTTGGTATGGTGGTTGGCATTGAAATGAATGCTTCTGCAGTATCTGATGCTTGTAGGAATGCCGAGAATAATGGTGTAAAGAATTGTAGATTTATATGTTCAAAGGCAGAGGACGCATTGGGATCTCTGTTAAAGGAGTACCTACCTAAGGAACAAGTTAATGTTCCTAGTACCTCTGAAACCAGCATTGAAGAAGTTTCTGAGGGGTGTGCGCGCCATGAAACTGAAAATGGTGAACAAGCATCTCAGTGTTCAGAAAATGATAAGCAAGAAGATGAAGCTGAGGTTCAGAAGGGTAGTGAATCTGAAAATGGAAATACTTTGGTGCAACAATTTAAAAATGTTGTTGCTATTGTTGACCCTCCGCGTGCTGGACTTCATCCAACAGTGATCAAAGCTCTAAGGACTCATCCACGTCTGCGGAGGCTTGTTTACATATCTTGTAATCCTGAAAGTTTGGTGGCAAATGCTATTGAGCTTTGTACACCATCTCCTCTGAAAGTTGAAAAAGGAAACAAAGACAACAGAGGATGGAGAAACATGAGTAGTGCTGGTCTTGCGCGACACAGGGCCAAGTCTATGCCTATCTCAGAGGCCTTCCGACCCATAAAAGCTATGGCTGTTGATCTATTCCCACATACTGAGCATTGTGAATTGGTGATGCTCCTAGAGAGGTAG 2529 0.4437 MAETANSELSLPCSKTLNPSDPINGSPTHQAATEAEDLQIHHVTETETSSGQPSDDVVSGDKRKREDLESGDADPSLNPLWKTSLCSFFRRQGGSCSHGSACRYAHGEEELRPRPDNTWDPTSERAKKAMKADTGEKCDVSMGVMMTEVVVDDADAEDDDGSDHTLSKCLVHLPRKWASDNLRNFLNEEGISFKFAKKKKGMLVGFITFEDQEQLKSSSKELEGKSIGSRRLKVADVIPRSFEKKNSSNVTLCQESVQNADDASAKENTSNDVPLKGHADGETNGANLASDNSMSKTRSLRDVVTPLAHMAYVDQLEHKKSSLMQILKRLTRNARKACPNGISLPEWILKSRDIGGLPCQLEGIIGSPIVNGYRNKCEFSVGYSLEGKITVGFMLGNFREGVTAVEEAVDCPNVSKIGLQYASIFQEFLQHSNLPVWNRFKNSGFWRQLTVREGRTNGKVSDAENFGGIAEVMLIVQVSTKGFDDEMVTGEFEKLKQAFVVAATACSPPLPLTALVVQDHQGISNVAPTDAPLRSLLIPKAVGDRMDENNSAMDARIHDYISNLQFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVVGIEMNASAVSDACRNAENNGVKNCRFICSKAEDALGSLLKEYLPKEQVNVPSTSETSIEEVSEGCARHETENGEQASQCSENDKQEDEAEVQKGSESENGNTLVQQFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPLKVEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFRPIKAMAVDLFPHTEHCELVMLLER 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3698 842 SUPERFAMILY RNA-binding domain, RBD 171 244 IPR035979 GO:0003676
Bisa02g3698 842 ProSiteProfiles Zinc finger C3H1-type profile. 80 109 IPR000571 GO:0046872
Bisa02g3698 842 Pfam tRNA (Uracil-5-)-methyltransferase 727 777 IPR010280 GO:0006396|GO:0008173
Bisa02g3698 842 MobiDBLite consensus disorder prediction 671 723 - -
Bisa02g3698 842 Gene3D Vaccinia Virus protein VP39 540 841 IPR029063 -
Bisa02g3698 842 MobiDBLite consensus disorder prediction 702 716 - -
Bisa02g3698 842 ProSitePatterns RNA methyltransferase trmA family signature 1. 737 769 IPR030390 -
Bisa02g3698 842 MobiDBLite consensus disorder prediction 1 76 - -
Bisa02g3698 842 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 108 IPR000571 GO:0046872
Bisa02g3698 842 Gene3D - 75 114 - -
Bisa02g3698 842 SUPERFAMILY CCCH zinc finger 79 113 IPR036855 GO:0046872
Bisa02g3698 842 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 306 842 IPR029063 -
Bisa02g3698 842 MobiDBLite consensus disorder prediction 57 72 - -
Bisa02g3698 842 CDD AdoMet_MTases 602 657 - -
Bisa02g3698 842 Gene3D - 169 238 IPR012677 -
Bisa02g3698 842 MobiDBLite consensus disorder prediction 1 33 - -
Bisa02g3698 842 MobiDBLite consensus disorder prediction 259 297 - -
Bisa02g3698 842 Coils Coil 313 333 - -
Bisa02g3698 842 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 98 842 IPR045850 -
Bisa02g3698 842 SMART c3hfinal6 80 108 IPR000571 GO:0046872
Bisa02g3698 842 Pfam Methyltransferase domain 600 659 IPR025714 -
Bisa02g3698 842 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 303 842 IPR010280 GO:0006396|GO:0008173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa02g3698 tRNA_U5-meth_tr 1.2e-07 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa02g3698 02 89936006 89947535 Bisa02g3698 02 89936006 89947535 ECH