Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3607 ATGGAAGCCACGGAGGAGCTCGTGGGGTCCACCACCTCCAACAGCACCGTCGCCAAGGGCAAGCGCACCAAACGACACAGGCCTCTCTCTAATTCTAGCTCCTCCTCTGCTTCCGGGGATGATCATGTGTCCTTTAATTCGTCGACGACCACCACTTACGACAGCACGGAGGAGGAAGAAGACATGGCTAATTGCTTGATTCTCTTGGCTCAAGGCGGGGATGCTCCTAATAAGCAAGCTTCTAGTACTATTCCCAGTCCGATCACCAAGATTAATGGGTTCTATCTCTATGAGTGCAAAACTTGTAACAGAACCTTCCCTTCCTTTCAGGCCTTGGGAGGACACAGGGCCAGCCACAAAAAGCCTAAGCTTGACGACAAGAAACCCCAACCCCAACCCCAACCACCACCGCCAACGCCAACGCCGCCTCCACCGCCACAATCGCCGCCGGTGACGCAAGTTGGAATCTTTGACTTTGAAGAAGCAGAGGGAGCGCAACTCAAAACCACAACCCCTGTTCAAATGAAGGCTTTTCAGAGCAACAAGGCGAAGATTCACGAGTGTTCGATATGCGGGTCGGAGTTTACATCCGGGCAAGCATTGGGTGGGCACATGAGGAGGCACAGAGCGGCAACGAAGGAAGTGAAGCCCAGGCATGTTCTGGAATTGGATCTCAACTTGCCGGCCCCGGAAGACGATCTCCGGGAATCCAAGTTTCAGTTTACGCCGACGCAGAAGCCTCTGGTGCTCTCTGCCCCGGCTTTGGTGGATTGCCATTATTGA 783 0.539 MEATEELVGSTTSNSTVAKGKRTKRHRPLSNSSSSSASGDDHVSFNSSTTTTYDSTEEEEDMANCLILLAQGGDAPNKQASSTIPSPITKINGFYLYECKTCNRTFPSFQALGGHRASHKKPKLDDKKPQPQPQPPPPTPTPPPPPQSPPVTQVGIFDFEEAEGAQLKTTTPVQMKAFQSNKAKIHECSICGSEFTSGQALGGHMRRHRAATKEVKPRHVLELDLNLPAPEDDLRESKFQFTPTQKPLVLSAPALVDCHY 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3607 260 ProSitePatterns Zinc finger C2H2 type domain signature. 188 208 IPR013087 -
Bisa02g3607 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 213 IPR013087 -
Bisa02g3607 260 MobiDBLite consensus disorder prediction 1 59 - -
Bisa02g3607 260 Pfam C2H2-type zinc finger 186 210 - -
Bisa02g3607 260 Pfam C2H2-type zinc finger 97 122 - -
Bisa02g3607 260 MobiDBLite consensus disorder prediction 113 153 - -
Bisa02g3607 260 SUPERFAMILY beta-beta-alpha zinc fingers 96 208 IPR036236 -
Bisa02g3607 260 Gene3D Classic Zinc Finger 95 208 - -
Bisa02g3607 260 PANTHER ZINC FINGER PROTEIN ZAT5 48 247 - -
Bisa02g3607 260 MobiDBLite consensus disorder prediction 129 151 - -
Bisa02g3607 260 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Bisa02g3607 260 SMART c2h2final6 186 208 IPR013087 -
Bisa02g3607 260 SMART c2h2final6 97 119 IPR013087 -
Bisa02g3607 260 MobiDBLite consensus disorder prediction 1 18 - -
Bisa02g3607 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Bisa02g3607 260 MobiDBLite consensus disorder prediction 29 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3607 Bisa-ChrBisa02 88514384 88515166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3607 1 260 C2H2 Transcription Factor Family AT2G28200 42.628 3.35e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa02g3607 zf-C2H2_6 1.9e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1183 12 20113534 20114520 Bisa02g3607 02 88514384 88515166 CCT
Bisa12g1183 12 20113534 20114520 Bisa02g3607 02 88514384 88515166 ECH
Bisa02g3607 02 88514384 88515166 Bisa02g3607 02 88514384 88515166 ECH