Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3604 ATGGCGAACGGGAAGGATTCGGATGAGTTCGTGGTGTTGTCGCGGGTCCGGACGGGTTTGAAAAGGGAGTTTGCATTCGCCATGAAGGCTCAATCCGAGATCTGTGGATCTTTAGGTCGGACCCGTGCCAGCAAGAACCGGAATGGGGTTCAGGATACTCCTAGCAACAAGAGGTCCAAGAAGTCTGGTTCGTCGGGGGCTAAGAAAGATGAGCAGAGTGGTCAGAAGCGGGTGCAGGAAGATGTGGCAGAACCGAAAGATTTGGAAGGGGTGAAGGGAAAGGAGGTAAAGGCCGTGGAGGATATGGATGATGCTATGAGCGAGGAGGAGGCAAAAAGCGACGTGGTGGATCTCTCGAGCGACGACGAACCCAAGAACCTTGTGGGGGAATCAATGGGAAACAGGGAACCGGTGGAGGAGGCTGCAGTGCCCATTTGTGAAGAGGAACCCAAGAGCGATGTAGTACAAAATGTGAGCGACGATGAGCCCAAAAGTAGTCCTATGTTAGAATCTTCGAAGGGAGAGACAGCGGATGATATGGCGCAACCCATATGCCAAGACGGGGCCAAGGAATATCAAACAAATGAAGATTTACAGAAGCCGTTGACGACGGAGAGCTTCAGCAGGGGAGAGACATGCTCTCCAGGGGAAAAAGGTGTCGATGGGACAACACTCGTTTCTCTTAATGATGACGACAGGGTGAAGGCCATGATAGTGAAGCCACCGAGGCGGTTTACGCGGTCGGCATTGAAACAAAAGGAGGATGATTCGAAGCTCGTTAGTGACGGGAAAAACGCTTGCGATAAACCTATTGGAATTGGTGATGATGTTCAGGGAGAATGTGAGAATGGGGCATTAATCACAACTCCGGCACAAATAAAAATGTCGAAGAAGAGTAACTTGAAGAAATTTCCGACGAAGCTAAAGGACCTTCTAGCCACAGGGATTATTGAGGGACTTCCGGTCAAGTATGTTCGGGGAGTGAAGGCACGAAGGCCTGGAGAAACAGGTCTCCGAGGAGAGATTAGAGGCTCCGGGATTGTGTGCTATTGTGAAGTTTGTAACGGGGTTGAGGTTGTCACACCCACCGTGTTTGAGCTGCATGCTGGTAGTGCAAACAAACGCCCCCCCGAGTATATATACCTCGACAATGGGAATACGCTTCGTGATGTCATGAATACATGTTCGAGTGTTTCAGTGGACGTTTTGGAGGAAGCAGTCCAGAAAGTCCTTGGAGGTTTCACCATGAAGAAATCTGCCATATGTCTGAAATGCAGAGCGTCTATACCTCGAGCTGGCAAGGGATTGGCAAGACTGCTTTGCGATACATGCATGGAGATAAAAGAATGCAGACCTACGCCTGCACCTATTCAAATAGCTGAGACTAGTAATTGCTGTGCTTCACCTGCTGTTACTTTCAGCCAACCCAGGTCACCAGAACCAGTTGTGGTTCCAAAGTCATTAAACAATGGGATGAAGCACAGCACCTCTCGTGGCAAGAGTCAGGGAAGAATAACTAAGAAGGATTTACGTTTGCATAAGTTGGTTTTTGAGGAAGATGTGCTACCGGATGGAACTGAAGTAGCCTACTATGTTCGTGGACAGAAATTGTTGGTGGGTTACAAAAAGGGGTTCGCAATTGTTTGTAGCTGCTGCGACTCTGAGGTAAGCCCCTCGCAGTTTGAAGCTCATGCTGGTTGGGCATCCAGACGCAAACCTTATCTGCACATATACACTTCCAATGGAGTCTCTCTTCATGAATTGTCCATATCTCTATCAAAAGGTCGAAGGTTTTCTACCAATGAAAATGATGATCTTTGCAGCATATGTTCAGATGGAGGGGATCTTTTATGTTGTGATGGATGTCCAAGGGCTTTTCACATAGACTGTGTTCCTCTACCATGTGTTCCAACTGGCACTTGGTATTGTAAATATTGCCAGAACCTGTTCCAGAAAGACAAATATGTGGAACGTAATGTGAATGCTGTGGCAGCAGGAAGGATTGCAGGCATTGATCCTTTAGAGCAGATAAACCAAAGATGCATTCGTATTGTCAAAACTGTAGAGGTTGACCAGGGTGGTTGTGCATTATGCAGAGGCCATGATTTCAGCAAAAGCTTTGGTCCTCGGACAGTGATTATATGTGATCAGTGTGAGAGGGAATATCATGTAGGCTGTTTGAAGGAGCATAACATGCAAAACTTAGAGGAATTGCCTGAAGGCAATTGGTTCTGCTGCACAGATTGCAGTCGGATTTATTCTGCTTTGCTTAATTTGGTATCTTGTGGAGAAGAGAAGCTTACAGATTCCCTTTTAAATATGATACAAAAGAAGCATGAAGAAAAGGGTCTGGAAACTGGGCCTGGTCTTGATATAAAATGGAGGATTTTAAATTGGAAACTGGCTTCTTCTGATGAAACGAGGCAACTGCTTTCGAAGGCTGTTGCAATCTTCCATGAGCGATTTGATCCTATAGTTGATTCTACTTCAGGCCGTGATTTCATTCCGACAATGCTTTATGGAAGGAACATCAGGGGTCAAGATTTTGGCGGAATGTTTTGTGCAGTACTAACAGTGAACCAAGTGGTTGTTTCTGCAGGGGTATTTCGTATATTTGGGGCGGAAGTGGCAGAGCTTCCCTTAGTTGCTACAATTACAGATTGCCAAGGACAGGGTTACTTCCAAGCTTTGTTCTCTTGCATCGAAAGGCTTCTTGGATCTTTAAACGTGAGACAGTTTGTCCTACCAGCTGCTGATGAAGCTGAATCAATATGGACAAGTAAATTTGGCTTTGCCAAGTTAGACCAAGAAGAGATAAACAATTATAAGAAATACTATCACATGATGATATTTCAAGGGACCTCAGTGCTAAGGAAGTCAGTTCCTGCACCTTGA 2895 0.4611 MANGKDSDEFVVLSRVRTGLKREFAFAMKAQSEICGSLGRTRASKNRNGVQDTPSNKRSKKSGSSGAKKDEQSGQKRVQEDVAEPKDLEGVKGKEVKAVEDMDDAMSEEEAKSDVVDLSSDDEPKNLVGESMGNREPVEEAAVPICEEEPKSDVVQNVSDDEPKSSPMLESSKGETADDMAQPICQDGAKEYQTNEDLQKPLTTESFSRGETCSPGEKGVDGTTLVSLNDDDRVKAMIVKPPRRFTRSALKQKEDDSKLVSDGKNACDKPIGIGDDVQGECENGALITTPAQIKMSKKSNLKKFPTKLKDLLATGIIEGLPVKYVRGVKARRPGETGLRGEIRGSGIVCYCEVCNGVEVVTPTVFELHAGSANKRPPEYIYLDNGNTLRDVMNTCSSVSVDVLEEAVQKVLGGFTMKKSAICLKCRASIPRAGKGLARLLCDTCMEIKECRPTPAPIQIAETSNCCASPAVTFSQPRSPEPVVVPKSLNNGMKHSTSRGKSQGRITKKDLRLHKLVFEEDVLPDGTEVAYYVRGQKLLVGYKKGFAIVCSCCDSEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKGRRFSTNENDDLCSICSDGGDLLCCDGCPRAFHIDCVPLPCVPTGTWYCKYCQNLFQKDKYVERNVNAVAAGRIAGIDPLEQINQRCIRIVKTVEVDQGGCALCRGHDFSKSFGPRTVIICDQCEREYHVGCLKEHNMQNLEELPEGNWFCCTDCSRIYSALLNLVSCGEEKLTDSLLNMIQKKHEEKGLETGPGLDIKWRILNWKLASSDETRQLLSKAVAIFHERFDPIVDSTSGRDFIPTMLYGRNIRGQDFGGMFCAVLTVNQVVVSAGVFRIFGAEVAELPLVATITDCQGQGYFQALFSCIERLLGSLNVRQFVLPAADEAESIWTSKFGFAKLDQEEINNYKKYYHMMIFQGTSVLRKSVPAP 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3604 964 FunFam PHD finger family protein 791 960 - -
Bisa02g3604 964 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 689 752 IPR013083 -
Bisa02g3604 964 MobiDBLite consensus disorder prediction 206 225 - -
Bisa02g3604 964 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 850 949 IPR016181 -
Bisa02g3604 964 Gene3D - 791 959 - -
Bisa02g3604 964 PANTHER AUTOIMMUNE REGULATOR 72 960 - -
Bisa02g3604 964 MobiDBLite consensus disorder prediction 35 187 - -
Bisa02g3604 964 SUPERFAMILY FYVE/PHD zinc finger 686 750 IPR011011 -
Bisa02g3604 964 CDD PHD1_AIRE 606 646 - -
Bisa02g3604 964 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 671 IPR013083 -
Bisa02g3604 964 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 593 670 - -
Bisa02g3604 964 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 801 964 IPR000182 GO:0016747
Bisa02g3604 964 MobiDBLite consensus disorder prediction 477 504 - -
Bisa02g3604 964 Pfam Tify domain binding domain 340 395 IPR032308 -
Bisa02g3604 964 Pfam Tify domain binding domain 540 588 IPR032308 -
Bisa02g3604 964 MobiDBLite consensus disorder prediction 109 124 - -
Bisa02g3604 964 MobiDBLite consensus disorder prediction 141 158 - -
Bisa02g3604 964 Pfam PHD-finger 607 648 IPR019787 -
Bisa02g3604 964 ProSiteProfiles Zinc finger PHD-type profile. 604 649 IPR019787 -
Bisa02g3604 964 MobiDBLite consensus disorder prediction 37 61 - -
Bisa02g3604 964 MobiDBLite consensus disorder prediction 63 101 - -
Bisa02g3604 964 ProSitePatterns Zinc finger PHD-type signature. 607 646 IPR019786 -
Bisa02g3604 964 SMART PHD_3 606 647 IPR001965 -
Bisa02g3604 964 SMART PHD_3 694 750 IPR001965 -
Bisa02g3604 964 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 691 752 - -
Bisa02g3604 964 SUPERFAMILY FYVE/PHD zinc finger 594 649 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3604 Bisa-ChrBisa02 88495453 88501066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3604 293 961 PHD Transcription Factor Family AT2G36720 45.280 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa02g3604 TDBD 3.4e-15 No_clan