Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3600 ATGGAATTCTACAACCGGAGACTACTCCTATTGAACGAGGATGAACCCTCCTCCCCCGACGCATCGTCACCACCGGGATTAATAGCCATACCGTCGTCGTCGTCGTCGTCGCCGTTGGGAAGGCCTTTGAAACTGCCGGCACCTTCAGGCTTAAATACCAACGTCGCTTGCATCATCCTCATCCTCTTCGTCGTCCTCTTCTTATTAGGCTTCATCACCCTCTACATCAGAAATTTCGCCGACGACTCCCCCACTGCAGTATCATCCCGCCGCCGCCCCTCTTCTCTGGCATCTTCATATGACAACTCTCAGGCGTCCTCCAGCGGTGGTCTGGACCAAGCCACCGTCGAATCTCTGCCGGTGCTAGCGCACCACGGGGAAGCGAAGCACCAGGTTGATTGCGCCATTTGCCTTGGCGAGTTCAAAATCGGTGAGGCCGTCAAGATGATTCCGAACTGCAAGCACGTGTTTCACCCGAAGTGTATCGACACGTGGCTGTTCGCGCACGTGACGTGCCCGATTTGCCGGGGGACTAATTTTTTTACAGTGGAACGGTGCGCAGGGTTGGATAAGGTGGAACAAAGTGGTGATCAAGATGTGAGTCAAGAAAGATCGACGGTGGAGAATGGTGAAATGTGGACAGAATTGATGCGGACACGTGATCAGCGAAGGAGCAGTAGTTGTTCGAACTTTAGAGATACCGTTGTTTTGCCAAGAACATTGAGTTATTGA 732 0.5273 MEFYNRRLLLLNEDEPSSPDASSPPGLIAIPSSSSSSPLGRPLKLPAPSGLNTNVACIILILFVVLFLLGFITLYIRNFADDSPTAVSSRRRPSSLASSYDNSQASSSGGLDQATVESLPVLAHHGEAKHQVDCAICLGEFKIGEAVKMIPNCKHVFHPKCIDTWLFAHVTCPICRGTNFFTVERCAGLDKVEQSGDQDVSQERSTVENGEMWTELMRTRDQRRSSSCSNFRDTVVLPRTLSY 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3600 243 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Bisa02g3600 243 MobiDBLite consensus disorder prediction 84 111 - -
Bisa02g3600 243 CDD RING-H2_EL5-like 133 176 - -
Bisa02g3600 243 Pfam RING-like zinc finger 133 162 IPR001841 -
Bisa02g3600 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 179 IPR013083 -
Bisa02g3600 243 FunFam E3 ubiquitin-protein ligase ATL6 99 181 - -
Bisa02g3600 243 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 44 177 - -
Bisa02g3600 243 SUPERFAMILY RING/U-box 127 180 - -
Bisa02g3600 243 SMART ring_2 134 175 IPR001841 -
Bisa02g3600 243 MobiDBLite consensus disorder prediction 14 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3600 Bisa-ChrBisa02 88430270 88431001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3600 50 242 C3H Transcription Factor Family AT2G27940 39.216 5.24e-37 128