Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3584 ATGGGGAAGAATAAGGTTACGGACGAACAATTAGCCACTGTCCGATCCATCGTAGGTTCCGAATACAGCGACATGGACATCATTAGAGCCCTACACTTGGCCAACAACGACGCCACCGCTGCCATTAACATTATTTTTGATACTCCCAATTTCAAATTTAAACAGAAGTTAAGTGTAGGCACTCTCAACAATTCCCCAGTTTCGCATCAAAGTTCAAGTTCTGATACTGGAAGTGGAGGTGGAAGTGTTATCGCGAAGCCCAAGCCAACTGGTTCAGAAGACAAGCGTTGCTCGTTGGGGTTGGAAGCTAATGTTTCTGACTCTGCTTCTAACATTGGTGGTTGTACGCTCATTGAGGATGTCGGAGGTCGTTCGACTTCGGCCAGTAGTGATTGGTGGTTTGTGGGTTGTGGTGAAGTGGCAGGGCTATCGACTTGTAAAGGGAGGACTATCAACCCCGGTGATGAAGTGTTGTTCAAGTTTCCATCGAAGACAGGTTCAAAAACGCCACCCCCTGGTAAGGGTTTCGGACGGGGAAGACAGGCAGCAGCAACTTGCTCAGAGATAGTGCGATTCTATACCAGAGAGACTGGAGAGATTGGTAGAATACCAAATGAATGGGCTCGGTGTCTCTTGCCCCTTGTACGGGATAAGAAAGTTAGGATCGAGGGGCATTGTAAATTTTCTCCTACTAAATTGGGCATCATGGACACCATTCTTTTGTCAATCAGTGTATTCATCAACAGTTCAATGTTTCGTAAACATCACCCTGTTTCTCTTAAGGACGCCACAAATTCCACTGATGAATCAGTGTTTCATCCTCTTCCAACCTTGTTTAGGTTGCTAGGCCTGAACTCTTCTAAAAAGGCAGAGTTCACTCCCAGTGACTTGTATTCAAAGAAGCGCCCTTTCAACCAAAAGGAAAACTCTTCTCTTGAGGCTGCATTACTGCATATCAAATCTAAGTATCCTTCTCTAAATAACAATGAGATAAACAACGAGGATTCGATATCTGAAATTGATCTTGATAACATTGTTGGTGTTGGAGCCAGCTCGGAGCTAGAGGAAATGGATCCTCCAGCTAGTCTTCAGTGTGAACTGAGGCCCTATCAAAAGCAAGCTCTTAATTGGATGATCCAGCTCGAGAAGGGATGTCCTAAGGATGAGGCAGCAACAACTCTTCATCCATGTTGGGAGGCATATCACTTGGCAGACAAGAGGGATTTGGTTATCTATTTGAATGCTTTTTCTGGTGAAGCTACGATCGAATTTCCTAGCACACTTCAGATGGCTAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATAATGACCATAGCCCTCCTCCTTGCCCATTCAGGAAGGGGTGGATCATCAAGCAGTCAACCCTTGGCTCAGCCCTTCACTGAAGCTGGTGAAGTTAATGACACTGTGCAAAACTCTTCAAACATACTTAAGAAGGCAACAAAATTTTCAGGTTTTGATAAACTGATGAAGCAAAGGAAGTCTCTAACTAGTGGTGGCAGTCTGATAATATGTCCCATGACTCTTCTAGGACAGTGGAAGGCGGAGATTGAAACTCATGTGCAGCCTGGATCTCTGTCTTTGTATGTTCATTATGGACAGAACAGACCAAAAGATGCGAAAACTCTTACTCAGAGTGATGTTGTGATTACTACATATGGTGTCTTAACCTCTGAATTTTCCAGTGAGAATGCAGAGGATGATGGTGGACTTTTCTCAATTAGGTGGTTTAGGGTAGTACTTGATGAGGCACATATGATAAAATCTTCCAAAAGCCAAATTTCTATCGCAGCTACTGCTTTGGTTGCTGACAGACGTTGGTGTCTTACTGGGACTCCTATTCAGAACAGTCTTGAGGATATTTACAGTCTTCTTCGATTTTTAAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTCATTCAGAAACCATTTGAAGAGGGTGATGAGAGAGGGCTGAAGCTGGTTCAATCCATCTTGCAGCCAATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGAAAGCCTATACTAGTTCTCCCACCAGCTGATGTGCAGATAATTTATTGTGAACTTACAGAAGCTGAAAAGGACTTTTATGATGCTCTTTTCAAAAGATCTAAGGTCAAGTTTGATCAGTTTGTTGAACAAGGGCGTGTTCTTCATAATTATGCTTCCATATTGGAATTGCTCTTACGTCTTCGGCAATGTTGTGATCATCCGTTTCTTGTAATGAGTCGAGGTGATACACAAGAATTTTCTGACCTAAATAAACTGGCTAAGCGATTCCTCAAAGGAAATCATAATGCTTCCGAAGGGGAAGTAAAAGATGCACCTTCACTGGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAAGGGGAACATGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTATTGACACCTTGTGCTCACCGATTATGCCGGGAATGCCTCTTAGCGAGTTGGCGGAATTCTACTTCTGGTTTATGCCCTGTTTGTAGGAAAACAATCAGCAGGCAGGATCTATTAACTGCCCCCACAGAAAGTCGGTTTCAGGTTGATATTAAGAAGAACTGGGTGGAGTCATGCAAGGTAACGGTCCTTTTGCATGAACTTGAAAGTCTTCGCTCATCAGGCTCCAAGAGCATTGTCTTCAGCCAGTGGACTGCTTTTCTAGATCTCTTGCAGATTCCCTTTACTAGGAATAATATTCCATTTGTTCGCCTTGATGGGACTTTGAATCAGCAACAGCGCGAAAAAGTAATTAGACAATTCTCAGAAGACAGTGATATCCTGGTGTTGTTGATATCACTAAAAGCTGGTGGAGTGGGTGTAAATCTAACGGCAGCTTCAAATGCTTTTGTCATGGATCCATGGTGGAATCCAGCTGTAGAAGAGCAAGCTGTTATGCGTATTCATCGGATTGGACAAACAAAGAATGTGGCCATCAAACGGTTTATTGTGAAGGGAACAGTTGAGGAGAGGATGGAAGCGGTGCAAGCACGCAAACAGCGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCACGAATCGAGGAGCTGAAGATGCTTTTTACTTAG 3150 0.4375 MGKNKVTDEQLATVRSIVGSEYSDMDIIRALHLANNDATAAINIIFDTPNFKFKQKLSVGTLNNSPVSHQSSSSDTGSGGGSVIAKPKPTGSEDKRCSLGLEANVSDSASNIGGCTLIEDVGGRSTSASSDWWFVGCGEVAGLSTCKGRTINPGDEVLFKFPSKTGSKTPPPGKGFGRGRQAAATCSEIVRFYTRETGEIGRIPNEWARCLLPLVRDKKVRIEGHCKFSPTKLGIMDTILLSISVFINSSMFRKHHPVSLKDATNSTDESVFHPLPTLFRLLGLNSSKKAEFTPSDLYSKKRPFNQKENSSLEAALLHIKSKYPSLNNNEINNEDSISEIDLDNIVGVGASSELEEMDPPASLQCELRPYQKQALNWMIQLEKGCPKDEAATTLHPCWEAYHLADKRDLVIYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTIALLLAHSGRGGSSSSQPLAQPFTEAGEVNDTVQNSSNILKKATKFSGFDKLMKQRKSLTSGGSLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQNRPKDAKTLTQSDVVITTYGVLTSEFSSENAEDDGGLFSIRWFRVVLDEAHMIKSSKSQISIAATALVADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEEGDERGLKLVQSILQPIMLRRTKHSTDREGKPILVLPPADVQIIYCELTEAEKDFYDALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFSDLNKLAKRFLKGNHNASEGEVKDAPSLAYVQEVVEELRKGEHGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRKTISRQDLLTAPTESRFQVDIKKNWVESCKVTVLLHELESLRSSGSKSIVFSQWTAFLDLLQIPFTRNNIPFVRLDGTLNQQQREKVIRQFSEDSDILVLLISLKAGGVGVNLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKNVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3584 1049 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 812 862 IPR013083 -
Bisa02g3584 1049 SMART HIRAN_2 135 247 IPR014905 GO:0003676|GO:0008270|GO:0016818
Bisa02g3584 1049 Gene3D - 696 811 IPR027417 -
Bisa02g3584 1049 ProSiteProfiles Zinc finger RING-type profile. 814 854 IPR001841 -
Bisa02g3584 1049 SMART ring_2 814 853 IPR001841 -
Bisa02g3584 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 1038 IPR027417 -
Bisa02g3584 1049 Gene3D - 863 1047 IPR027417 -
Bisa02g3584 1049 Pfam SNF2-related domain 370 758 IPR000330 GO:0005524|GO:0140658
Bisa02g3584 1049 Pfam Zinc finger, C3HC4 type (RING finger) 811 859 - -
Bisa02g3584 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 680 IPR027417 -
Bisa02g3584 1049 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 425 642 IPR014001 -
Bisa02g3584 1049 CDD UBA_Cbl_like 11 49 - -
Bisa02g3584 1049 Pfam Helicase conserved C-terminal domain 886 996 IPR001650 -
Bisa02g3584 1049 FunFam DNA repair protein RAD5B 422 681 - -
Bisa02g3584 1049 MobiDBLite consensus disorder prediction 64 96 - -
Bisa02g3584 1049 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 126 1049 - -
Bisa02g3584 1049 ProSitePatterns Zinc finger RING-type signature. 829 838 IPR017907 -
Bisa02g3584 1049 SUPERFAMILY RING/U-box 802 860 - -
Bisa02g3584 1049 CDD SF2_C_SNF 876 1007 - -
Bisa02g3584 1049 SMART helicmild6 913 996 IPR001650 -
Bisa02g3584 1049 Pfam HIRAN domain 136 243 IPR014905 GO:0003676|GO:0008270|GO:0016818
Bisa02g3584 1049 MobiDBLite consensus disorder prediction 64 80 - -
Bisa02g3584 1049 Gene3D - 423 470 IPR038718 -
Bisa02g3584 1049 Gene3D - 481 681 IPR038718 -
Bisa02g3584 1049 CDD DEXDc_SHPRH-like 367 680 - -
Bisa02g3584 1049 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 884 1049 IPR001650 -
Bisa02g3584 1049 SMART ultradead3 363 661 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3584 Bisa-ChrBisa02 88028807 88044937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3584 5 1049 RAD5 or RAD16-like Gene Family AT5G22750 70.577 0.0 1525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa02g3584 SNF2_N 5e-88 CL0023