Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3578 ATGTGCAGGAATATGAAATATATATTAAAATTTCATCAAATTTGTGTTCCCATTTGTGCTGTGTTTGGGAATTTGTATGGAAAGTGGAATGGTGTTGAGGTCAAGGCTGGGGAGCCTGTCGGAGTAAATCCAGAAGATTTGGGTAAATGCATACACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAAACAAGTGAACATGTGGTCCTTTACCTGAAATTTGGTGACCAGAAGCTTGTTTTAGGAACCCTTTCCCAGGAGAAATTCCCTCAATTATCTTTTGATTTGGTTCTAGAGAAGAAGTTTGAGCTCTCTCACAATTGGAAAAATGGAAGTGTTTATTTCTATAGTGAGGATGATGAAGATCTCCCATTAGTGACCAAAGAAAATGCAAAACCTGATATAAAGACTGAAGCACCAAAGCCTGCTGCAGCTAAAAGTAATGATGTAAAGCCTGGTGAATCAAAAAAACAAGTCAAGGTTGTTGAACCAAAGAAGGATGAAGACGAATCTGAAGATGAAGAGGATGATGAATCTGATGATGAAGATGAAAATTCTGATGAGGATATGTTGGGTGGTGATAATGATAGTGATGACGAAAGCTATAGTGATGAGGATGATGAAGAAACCCCTCCCAAGAAGACTGATCAGGGTAAGAAGAGACTTAATGAGTCTGCATCAAAAACTCCTGTTGCTGCCAAGAAAGCTAAACCTAGTACTCCTCAAAAGGCTGATGGCAAGAAAGGTGGCCATACCCATATAGCAACTCCTCATCCTAAGAAGGGTGGACAGACTCCTAAAAGCGAAACCAAGGACCAAACTCCCAAATCTGGTGGACAATTCACATGCAAATCTTGTAGCAAGTCTTTCACGTCAGAAGGTGGTCTGCAACAACATTCAAAGGCTAAGCATGGTGGTTAG 927 0.4067 MCRNMKYILKFHQICVPICAVFGNLYGKWNGVEVKAGEPVGVNPEDLGKCIHLSQAALGEAKKDKTSEHVVLYLKFGDQKLVLGTLSQEKFPQLSFDLVLEKKFELSHNWKNGSVYFYSEDDEDLPLVTKENAKPDIKTEAPKPAAAKSNDVKPGESKKQVKVVEPKKDEDESEDEEDDESDDEDENSDEDMLGGDNDSDDESYSDEDDEETPPKKTDQGKKRLNESASKTPVAAKKAKPSTPQKADGKKGGHTHIATPHPKKGGQTPKSETKDQTPKSGGQFTCKSCSKSFTSEGGLQQHSKAKHGG 308
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3578 308 Gene3D Nucleoplasmin core domain 26 123 - -
Bisa02g3578 308 ProSitePatterns Zinc finger C2H2 type domain signature. 285 306 IPR013087 -
Bisa02g3578 308 MobiDBLite consensus disorder prediction 209 225 - -
Bisa02g3578 308 FunFam Histone deacetylase HDT1 28 122 - -
Bisa02g3578 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 283 308 IPR013087 -
Bisa02g3578 308 Gene3D Classic Zinc Finger 281 307 - -
Bisa02g3578 308 MobiDBLite consensus disorder prediction 270 300 - -
Bisa02g3578 308 Pfam Nucleoplasmin-like domain 31 111 IPR041232 -
Bisa02g3578 308 SUPERFAMILY beta-beta-alpha zinc fingers 274 305 IPR036236 -
Bisa02g3578 308 SMART c2h2final6 283 306 IPR013087 -
Bisa02g3578 308 MobiDBLite consensus disorder prediction 152 169 - -
Bisa02g3578 308 MobiDBLite consensus disorder prediction 170 208 - -
Bisa02g3578 308 MobiDBLite consensus disorder prediction 133 308 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bisa02g3578 Bisa-ChrBisa02 87926031 87932722 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3578 29 306 C2H2 Transcription Factor Family AT5G03740 42.953 1.84e-51 169
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa02g3578 NPL 1.6e-08 CL0055
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1134 12 19029717 19031163 Bisa02g3578 02 87926031 87932722 CCT