Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bisa02g3578 | ATGTGCAGGAATATGAAATATATATTAAAATTTCATCAAATTTGTGTTCCCATTTGTGCTGTGTTTGGGAATTTGTATGGAAAGTGGAATGGTGTTGAGGTCAAGGCTGGGGAGCCTGTCGGAGTAAATCCAGAAGATTTGGGTAAATGCATACACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAAACAAGTGAACATGTGGTCCTTTACCTGAAATTTGGTGACCAGAAGCTTGTTTTAGGAACCCTTTCCCAGGAGAAATTCCCTCAATTATCTTTTGATTTGGTTCTAGAGAAGAAGTTTGAGCTCTCTCACAATTGGAAAAATGGAAGTGTTTATTTCTATAGTGAGGATGATGAAGATCTCCCATTAGTGACCAAAGAAAATGCAAAACCTGATATAAAGACTGAAGCACCAAAGCCTGCTGCAGCTAAAAGTAATGATGTAAAGCCTGGTGAATCAAAAAAACAAGTCAAGGTTGTTGAACCAAAGAAGGATGAAGACGAATCTGAAGATGAAGAGGATGATGAATCTGATGATGAAGATGAAAATTCTGATGAGGATATGTTGGGTGGTGATAATGATAGTGATGACGAAAGCTATAGTGATGAGGATGATGAAGAAACCCCTCCCAAGAAGACTGATCAGGGTAAGAAGAGACTTAATGAGTCTGCATCAAAAACTCCTGTTGCTGCCAAGAAAGCTAAACCTAGTACTCCTCAAAAGGCTGATGGCAAGAAAGGTGGCCATACCCATATAGCAACTCCTCATCCTAAGAAGGGTGGACAGACTCCTAAAAGCGAAACCAAGGACCAAACTCCCAAATCTGGTGGACAATTCACATGCAAATCTTGTAGCAAGTCTTTCACGTCAGAAGGTGGTCTGCAACAACATTCAAAGGCTAAGCATGGTGGTTAG | 927 | 0.4067 | MCRNMKYILKFHQICVPICAVFGNLYGKWNGVEVKAGEPVGVNPEDLGKCIHLSQAALGEAKKDKTSEHVVLYLKFGDQKLVLGTLSQEKFPQLSFDLVLEKKFELSHNWKNGSVYFYSEDDEDLPLVTKENAKPDIKTEAPKPAAAKSNDVKPGESKKQVKVVEPKKDEDESEDEEDDESDDEDENSDEDMLGGDNDSDDESYSDEDDEETPPKKTDQGKKRLNESASKTPVAAKKAKPSTPQKADGKKGGHTHIATPHPKKGGQTPKSETKDQTPKSGGQFTCKSCSKSFTSEGGLQQHSKAKHGG | 308 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bisa02g3578 | 308 | Gene3D | Nucleoplasmin core domain | 26 | 123 | - | - | |
Bisa02g3578 | 308 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 285 | 306 | IPR013087 | - | |
Bisa02g3578 | 308 | MobiDBLite | consensus disorder prediction | 209 | 225 | - | - | |
Bisa02g3578 | 308 | FunFam | Histone deacetylase HDT1 | 28 | 122 | - | - | |
Bisa02g3578 | 308 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 283 | 308 | IPR013087 | - | |
Bisa02g3578 | 308 | Gene3D | Classic Zinc Finger | 281 | 307 | - | - | |
Bisa02g3578 | 308 | MobiDBLite | consensus disorder prediction | 270 | 300 | - | - | |
Bisa02g3578 | 308 | Pfam | Nucleoplasmin-like domain | 31 | 111 | IPR041232 | - | |
Bisa02g3578 | 308 | SUPERFAMILY | beta-beta-alpha zinc fingers | 274 | 305 | IPR036236 | - | |
Bisa02g3578 | 308 | SMART | c2h2final6 | 283 | 306 | IPR013087 | - | |
Bisa02g3578 | 308 | MobiDBLite | consensus disorder prediction | 152 | 169 | - | - | |
Bisa02g3578 | 308 | MobiDBLite | consensus disorder prediction | 170 | 208 | - | - | |
Bisa02g3578 | 308 | MobiDBLite | consensus disorder prediction | 133 | 308 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bisa02g3578 | Bisa-ChrBisa02 | 87926031 | 87932722 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bisa02g3578 | 29 | 306 | C2H2 Transcription Factor Family | AT5G03740 | 42.953 | 1.84e-51 | 169 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Bisa02g3578 | NPL | 1.6e-08 | CL0055 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bisa12g1134 | 12 | 19029717 | 19031163 | Bisa02g3578 | 02 | 87926031 | 87932722 | CCT |