Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3544 ATGGGGGATCTTGGAGCAGCGTCAAAACCAATGGGTCTCACATATCTCAATAGCAGCGGAGAGGGGGATGCCAGCGAAGATGGTGACGGAGACGAGAGACATGGAGAGGTTGTGAAGGGCAGGGATGGAGTCGAGAGGGATAGGGCGGCCACAGCGGACTCAATTCATGGTCATGCTTTTATGTACATGGAGCAAGGTGCATGCGGAAATTTGACGCAAAAATCATTACCTAGTCAACTTTCTCAAATATTGGGCTTTCCCTCACAAATTAATCCCCATAGGATTTGGAACGATCTGTGTGAAGATATGGGTTTGAGAGATCAGTACTGCATTAATGCACAAGATCACAAGAATCATAATAATCTCTTCTTTCACCATGCTTCTCCAACTTTCATTGAATGGCTCAAAACATCTTCTTCTTCTTCTTCTTCCTCCTGTTCTTCTTCATCTTCTGATCAGGAGACTCATCAAAACGAGGTCGTTCGGGAGACTATCCAATTTCTGCCCCTATCAAATTCAAGAGAAGTAGAGTTAGAAGTTGGAGTGGAGAAAGAGAGTTTAGTGAAGAGGGAAGAAGAGAAGGTGGATCAGCAAGTGGGTGTGGCTTTGCACATTGGTTTGCCTAATAGCAGTGCAGAATTAGAAGATTGTGATGATGAGAAGAAGGCTGTTGGTGACGTTAAAGAAGAGGAAGAAGAAGAAGAAGAAGGGATGAATATGACGATGAAGAGAAGCTTGTTGTATGGAAATGGATGTTCTAGTAATGAATTGAAGCAGGAGAGAAGGTTCTGGATTCCAACTCCAGCTCAGATCCTTATTGGGCCTATGCAATTCGCTTGCTCCATATGCAGTAAAACCTTCAATAGGTACAACAACATGCAGATGCATATGTGGGGGCATGGGTCCGAATTCAGGAAAGGACCAGACTCACTGAGAGGAACCCAACCAGCAGCGATGCTGAGGCTGCCGTGTTACTGCTGTGCCCATGGGTGCAAGAACAACATCAACCACCCTCGAGCCAAGCCCCTCAAGGACTTCCGAACCCTCCAAACCCACTACAAGCGGAAGCATGGCTCCAAGCCCTTCATGTGCCGAAAGTGTGCCAAGGCTTTTGCTGTCAAAGGGGACTGGAGGACCCACGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGTTCCGACTTCAAGCACAAGAGGTCCCTCAAGGACCACATTAGGTCTTTCGGAAAGGGCCACAACCCCCATCCATCTCTCGAGGGTTTCGATCACAACGAGAAGGATTTCGAGGAAGATGAAGTCACTCATACGTAA 1314 0.4696 MGDLGAASKPMGLTYLNSSGEGDASEDGDGDERHGEVVKGRDGVERDRAATADSIHGHAFMYMEQGACGNLTQKSLPSQLSQILGFPSQINPHRIWNDLCEDMGLRDQYCINAQDHKNHNNLFFHHASPTFIEWLKTSSSSSSSSCSSSSSDQETHQNEVVRETIQFLPLSNSREVELEVGVEKESLVKREEEKVDQQVGVALHIGLPNSSAELEDCDDEKKAVGDVKEEEEEEEEGMNMTMKRSLLYGNGCSSNELKQERRFWIPTPAQILIGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCAKAFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPSLEGFDHNEKDFEEDEVTHT 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3544 437 Gene3D Classic Zinc Finger 321 411 - -
Bisa02g3544 437 PANTHER ZINC FINGER PROTEIN WIP2 136 431 IPR043584 GO:0003700|GO:0010468
Bisa02g3544 437 MobiDBLite consensus disorder prediction 1 36 - -
Bisa02g3544 437 SUPERFAMILY beta-beta-alpha zinc fingers 348 382 IPR036236 -
Bisa02g3544 437 MobiDBLite consensus disorder prediction 407 437 - -
Bisa02g3544 437 Coils Coil 214 234 - -
Bisa02g3544 437 ProSitePatterns Zinc finger C2H2 type domain signature. 280 300 IPR013087 -
Bisa02g3544 437 SMART c2h2final6 278 300 IPR013087 -
Bisa02g3544 437 SMART c2h2final6 325 357 IPR013087 -
Bisa02g3544 437 SMART c2h2final6 362 382 IPR013087 -
Bisa02g3544 437 FunFam Zinc finger protein WIP2 331 413 - -
Bisa02g3544 437 Gene3D Classic Zinc Finger 277 300 - -
Bisa02g3544 437 SUPERFAMILY beta-beta-alpha zinc fingers 274 301 IPR036236 -
Bisa02g3544 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 305 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3544 Bisa-ChrBisa02 87230228 87239482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3544 128 430 C2H2 Transcription Factor Family AT1G08290 58.683 1.19e-116 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa02g3544 None None None