Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3527 ATGCCACGCGGAAAGGTAAATTCTTCATCAGTTGCTAAGCCAAGTGAGCCTGAAAAGCCAATTGAATCTGAGGAGAAAGTTGATTATGATGAGGAAAATGATCCTGAGGAAATGACAGAAGAAGAAATTGAATATGAAGAAGTGGAAGAAGAAGAGGAGGTAGAAGAGATAGAAGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGATTGAAGAAGTGGAAGATGAGCAAAACCTTAGCACTAATGAGGCAAAGGTGGAAGACGAGGATGAGAAGGAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCATGGTTCTGAGGTATACATTGGTGGTATTCCTCATGATGCCTCAATGGAAGATCTGAAGGCTTTTTGTGAGTCTATTGGGGAAGTTACAGAGGTTCGAATTATGAAGGGAAAAGACTTTGCTGAGAATAAAGGTTTTGCTTTCGTTACTTTTAGAAGTGTAGAACTATCTTCTAAAGCCATTGATGAGCTGAATAATACAGAATTCAAGGGTAAAAAAATAAAATGCTCAAAATCTCAAGCAAAACACCGTCTTTTCATTGGTAATGTTCCGAGAAGTTGGGGAGAGGAAGATTTGAGGAAGGTTGTGACCGAGATTGGACCTGGAGTTACCACTGTAGAACTAGTCAAGGATTTGAAGAACTCAAAGAATAACCGTGGCTTTGCTTTTATCGATTATTATAATCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAACCCAAAATTTAAGCTAGGTGACAATGCTCCAACTGTAAGCTGGGCTGACCCCAAAAATGCCGATTCCTCTGCTGCATCTCAGGTGAAGGCAGTATACGTTAAAAACTTACCTAAGAATGTAACTCAAGATCAGTTAATGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTACTGCCACCAGCAAAGTCTGGGCAGGAAAAGAACCGAATTGGTTTTGTACATTTTGCAGAGAGGTCAAGTGCTATGAAGGCACTTAAAAACACTGAAAGATATGAATTAGCTGGTCAAGTTTTGGAGTGCTCTCTGGCAAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAATATGCAGAAGGCAGGATTGCTTCCAAGCTATCCGCCGCGTGTTAATTATGGTTTGGCTGGGGGTGCCTACGGTGCACTTGGTGCAGGATATGGTCCTGCAGCTCTTGCGCAGCCCATGGTATATGGAAGGGGTCCAACTCCTGGTGGAATGGCCATGATGCCCATGCTTTTGCCCGATGGACGGATTGGATATGTCCTGCAACAACCAGGAGCGCAACCACAAACCCCACCTGCACAGCAAAGGGGCGGCAGGCATGGTGGTGGTGGGAGTGGTAGCAGGAGCGGTGGCAATTCAGGAAAGGGAAGGCACAGCAATGATAATGGCCAAGGGCGCAGATATCGCCCATATTAG 1464 0.4467 MPRGKVNSSSVAKPSEPEKPIESEEKVDYDEENDPEEMTEEEIEYEEVEEEEEVEEIEEEVEEEEEEEEEEEIEEVEDEQNLSTNEAKVEDEDEKEKHAELLSLPPHGSEVYIGGIPHDASMEDLKAFCESIGEVTEVRIMKGKDFAENKGFAFVTFRSVELSSKAIDELNNTEFKGKKIKCSKSQAKHRLFIGNVPRSWGEEDLRKVVTEIGPGVTTVELVKDLKNSKNNRGFAFIDYYNHACAEYSRQKMMNPKFKLGDNAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQDQLMKLFEHHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKNTERYELAGQVLECSLAKPQADQKSGGSNMQKAGLLPSYPPRVNYGLAGGAYGALGAGYGPAALAQPMVYGRGPTPGGMAMMPMLLPDGRIGYVLQQPGAQPQTPPAQQRGGRHGGGGSGSRSGGNSGKGRHSNDNGQGRRYRPY 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3527 487 CDD RRM_SF 111 183 - -
Bisa02g3527 487 MobiDBLite consensus disorder prediction 1 101 - -
Bisa02g3527 487 Coils Coil 38 86 - -
Bisa02g3527 487 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 190 270 - -
Bisa02g3527 487 SMART rrm2_1 110 183 IPR003954 GO:0003676
Bisa02g3527 487 SMART rrm2_1 284 357 IPR003954 GO:0003676
Bisa02g3527 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 361 IPR000504 GO:0003723
Bisa02g3527 487 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 7 470 - -
Bisa02g3527 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 271 IPR000504 GO:0003723
Bisa02g3527 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 354 IPR000504 GO:0003723
Bisa02g3527 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 254 IPR000504 GO:0003723
Bisa02g3527 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Bisa02g3527 487 Gene3D - 8 189 IPR012677 -
Bisa02g3527 487 MobiDBLite consensus disorder prediction 27 80 - -
Bisa02g3527 487 SUPERFAMILY RNA-binding domain, RBD 279 384 IPR035979 GO:0003676
Bisa02g3527 487 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 272 381 - -
Bisa02g3527 487 Gene3D - 272 377 IPR012677 -
Bisa02g3527 487 MobiDBLite consensus disorder prediction 81 101 - -
Bisa02g3527 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Bisa02g3527 487 Gene3D - 190 270 IPR012677 -
Bisa02g3527 487 SMART rrm1_1 284 357 IPR000504 GO:0003723
Bisa02g3527 487 SMART rrm1_1 110 183 IPR000504 GO:0003723
Bisa02g3527 487 SMART rrm1_1 190 267 IPR000504 GO:0003723
Bisa02g3527 487 MobiDBLite consensus disorder prediction 437 487 - -
Bisa02g3527 487 FunFam RNA recognition motif-containing protein 21 189 - -
Bisa02g3527 487 SUPERFAMILY RNA-binding domain, RBD 106 275 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3527 Bisa-ChrBisa02 86962013 86965600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3527 111 444 Eukaryotic Initiation Factors Gene Family AT4G34110 21.526 1.05e-09 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa02g3527 02 86962013 86965600 Bisa02g3527 02 86962013 86965600 ECH