Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3471 ATGGATGAGATTGAAGTTCCTCAGTATTTCTTGTGTCCGATTTCGCTTCAGATCATGAAGGACCCCGTGACGACGTTCACGGGCATAACCTACGACAGGGAAAGCATGGAGCAGTGGTTGCTGACGGCGAAGGACTCCACGTGTCCTGTCACGAAGCAGCCATTGCCACCTGGCTCCGACCTCACTCCCAACCACACCCTCCGCCGTCTCATCCAGGCTTGGTGCTCGGAAAACGCCGCCCTCGGCGTCGATCGCATCCCGACCCCCAAGTCCCCTCCCGACAACACCCTCCTCAAGAAGCTTCTGAGAAATCTCAAACATCCCCAGTTGTACCAATCCGCATTGGAGAGATTACGCTCTCTGGCTTCAGAAAATCAGAGGAATATCAAGTCCATGGTGGAATCTGGTGTGGCCGAGTCTATGATACCGCTAATTGCAAACAGATTCGAAGAATTAGGATCCAGCAGTACTAGTACTAGTTCCCTGGAAGAAGCTCTCACAATTCTTGGCTTGCTCTGGAACAACAACAACATCAAGCCTCTGGTTGTTCAAAACCTGGGCCTCATAAAATCGTTGGCTTGGATTCTCCAGCACCACGCGGACTCCAACATCAACTTAATAAACAAAGCAATGCCTGTCTTAAAATTAACAATCGAGCTCGCAGATTCTACTCTTCTGGGAAGCTTAAAGCTGGAATTTTTCAGAGAAATCACAAGGGTGCTGCGAAACAGAGCAATCTCACAACAAGCTGTGAAATCAGCATTGCACGTGCTCACAGAAACGTGTCCTTTGGGAAGAAACAGAGGGAAGATCGTGGAAGCGGGGGCAGTGTTTGAACTAATCGAGCTTGAGTTGGAAAAGCCAGAGACGCACATAACGGAGCTTGTGTTTAACCTTCTTGCGAAGTTATGTGCGTGTGCGGACGGGAGGGAGCAGTTTCTGTCGCATGCGGCCGGGTTTGCGGTGGCGGCGAAGAGGGTGCTGAGGGTGTCGCCGGCAACGGATGAGAGGGCAGTTCATGTGATGTGGTTAATGGCGAGGTATTCGGCGTCGAACGACGTCGTTTGGGAGATGTTGAGGGTCGGGGCTGTCACGAAGCTGTTCATGGTGATGCAGGCGAGTTGTGATGCGAATTTGAAAGAGAAAACGAGGGGGATTCTGAGGCTGCACTCCAAAGCTTGGAATAATTCTCCTTGTATTCAAGTCTATCTGTTAACCAGACACCAAAGGTGA 1233 0.5077 MDEIEVPQYFLCPISLQIMKDPVTTFTGITYDRESMEQWLLTAKDSTCPVTKQPLPPGSDLTPNHTLRRLIQAWCSENAALGVDRIPTPKSPPDNTLLKKLLRNLKHPQLYQSALERLRSLASENQRNIKSMVESGVAESMIPLIANRFEELGSSSTSTSSLEEALTILGLLWNNNNIKPLVVQNLGLIKSLAWILQHHADSNINLINKAMPVLKLTIELADSTLLGSLKLEFFREITRVLRNRAISQQAVKSALHVLTETCPLGRNRGKIVEAGAVFELIELELEKPETHITELVFNLLAKLCACADGREQFLSHAAGFAVAAKRVLRVSPATDERAVHVMWLMARYSASNDVVWEMLRVGAVTKLFMVMQASCDANLKEKTRGILRLHSKAWNNSPCIQVYLLTRHQR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3471 410 SUPERFAMILY RING/U-box 3 84 - -
Bisa02g3471 410 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Bisa02g3471 410 Gene3D - 230 401 IPR011989 -
Bisa02g3471 410 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Bisa02g3471 410 CDD RING-Ubox_PUB 7 55 IPR045210 -
Bisa02g3471 410 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Bisa02g3471 410 SUPERFAMILY ARM repeat 99 387 IPR016024 -
Bisa02g3471 410 Gene3D - 78 224 IPR011989 -
Bisa02g3471 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Bisa02g3471 410 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3471 Bisa-ChrBisa02 86167131 86168363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3471 2 400 U-box Gene Family AT2G35930 42.260 1.43e-102 308