Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3470 ATGTGGGTGAAGGCTCGTTTCAATTTTGAAGCACTTGGAGTAGTGTTGGCTATGGATGAAAAAATTGAAGTTCCTCTCCATTTTCTGTGCCCTATTTCTCTGCAACTCATGAGAGACCCAGTGACGGTTTGTACAGGAATCACCTACGACAGAGAAAGCATAGAGAGATGGTTATTTTCATGCAACAACACCACTTGCCCAGTCACAAAGCAATCACTCTTAGACACACATCTTAATAATCTTATTCTAACACCAAACCATACTCTACGAAGTTTGATCCAAACATGGTGTGCCCACAATTCCTCGTTTGGAATTGAACGTATTCCCACTCCAAAGCCACTCCTTGAAAGCACCCACATCGCAAGACTCCTCTCTGAAGCAACCAGGTGCCCGGATAAGCAGCTCAAGTGCATTAAAACACTTCGATCTATAGCTTTGGAAAGCGAAAGGAACAAGAACTGTTTAAAATCCGCAGGCGCAATAGAATTCTTGGCTTCAACCATGAAGAGCATTCACAATAGTACTAGTGAAGAAGGTGAAGCAGTCATTGAACTCATGTTCCACCTAAACCCTTCTGAAACCCAGCTTAAGAATCTCATAAACAATGAAAGCATTCAGTTCATAGAGTCCTTGGTTCAGATCTTAAAGCTTGGGACATCCCAATCACGAGCTCATTCAACCATGCTATTAAAATCAGTTTTTGAAGTGGCCAACCCTACCCAATTTACCAGCGTGAGAACTGAACTCTACGTGGAGATATCACGAGTGCTTCGCGACCAGATCTCACACCAGGCTTCTAAGGCTGGTATAAAGCTTGTTATAGAGCTATGTCCATGGAGAAGGAACCGAATAAAGGCGGTTGAAGGTGGTTTAGTTTTTGCCCTAATTGAGCTTCTTCTTCTTGTTAATGAAAGAAGGTTATGTGAGTTGATGCTAATAGCTTTGGATCAACTTTGTGGTTGCGCTGAGGGGCGAGCCGAGGTGGTGAACCATGGCGGAGGAGTGGCGGTTGTGGCGGAGAAGATTCTTAGGGTTTCGCGGGTGGGAAGTGATAGAGGGGTTAGGGTTTTGGCATCCATATGTAAGTATTCAGGGACTCCTAGGGTTCTTCAGGAGATGTTACAAGTCGGAGGTGTGTCAAAATTGTGTTTGGTGGTTCAAGTGGTTCATGAGAGTTTGAGGACTAAAGAGAGGGCCAGGGAGGTTCTTAGGTTGCATTCTAGGGTTTGGAAGAATTCCCCATGTATTCCTCTTCCTTTGATTTCATCCTTTCCGTGA 1278 0.4429 MWVKARFNFEALGVVLAMDEKIEVPLHFLCPISLQLMRDPVTVCTGITYDRESIERWLFSCNNTTCPVTKQSLLDTHLNNLILTPNHTLRSLIQTWCAHNSSFGIERIPTPKPLLESTHIARLLSEATRCPDKQLKCIKTLRSIALESERNKNCLKSAGAIEFLASTMKSIHNSTSEEGEAVIELMFHLNPSETQLKNLINNESIQFIESLVQILKLGTSQSRAHSTMLLKSVFEVANPTQFTSVRTELYVEISRVLRDQISHQASKAGIKLVIELCPWRRNRIKAVEGGLVFALIELLLLVNERRLCELMLIALDQLCGCAEGRAEVVNHGGGVAVVAEKILRVSRVGSDRGVRVLASICKYSGTPRVLQEMLQVGGVSKLCLVVQVVHESLRTKERAREVLRLHSRVWKNSPCIPLPLISSFP 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3470 425 PANTHER WDSAM1 PROTEIN 20 417 IPR045185 GO:0061630
Bisa02g3470 425 CDD RING-Ubox_PUB 25 78 IPR045210 -
Bisa02g3470 425 SUPERFAMILY ARM repeat 130 392 IPR016024 -
Bisa02g3470 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 105 IPR013083 -
Bisa02g3470 425 SUPERFAMILY RING/U-box 21 105 - -
Bisa02g3470 425 ProSiteProfiles U-box domain profile. 23 103 IPR003613 GO:0004842|GO:0016567
Bisa02g3470 425 Gene3D - 117 415 IPR011989 -
Bisa02g3470 425 SMART Ubox_2 27 96 IPR003613 GO:0004842|GO:0016567
Bisa02g3470 425 Pfam U-box domain 24 101 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3470 Bisa-ChrBisa02 86117985 86121878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3470 18 425 U-box Gene Family AT2G35930 48.544 1.15e-140 406