Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa02g3451 | ATGACTGATAAGCTTCAATATATCTGGGCTAAGAAGGGTGCAGTTCATGTTATGGATAAGAGTGATGATTTCTTCTTGCTGAAGTTTGAGGATGAAGGTGATTACAAGCATGCTCTTTTCGAAGGATTGAAGTCAATTTGCCTCCATGGTTTCGTCTCCGTCTTTCTTCGTGGTTCACGACTTGTATTTTCTGACTTGCATTCGGATATACGGAAGTGGTTTATGAAATCCCATGATAAGAGCAATGCCACTGAATCGAAGCCTACGAATCAGATGAAGCCTGCTTCAGTTAAACCACAGCCGGAGAAACCAGTAGCTGGAGGTGAAGATGGTTCAGGGAGGAGGAAAACTAGCAAATATTTTGCCACTGACAAAAACAAGCCAAAAGATGAAAAAGAGGCACAGGAACTTCCTGCTAAGAGAAAGAATCCTAAGGACAGTGAGGAATTGCAGAAGCCCCCTCCTAAAAAAATTCATTTAGATGATGAAGATGATGACTCTGCCTTGCTTACATCTAGAAAGAAATCAACTGATACCACTCCAGCGAAAAAATTGAAAAGTGGGTCTGGCAGGGGAATTCCACTTAAGTCTCCATATTTGGAAGAAAGTGATGAAGATGATGATAAAGATGCTGTGTCCCCTCTTAAATCTGGCGGAAGGGGTCGTGGCGGAAGAGGAGCATTGGCACAATCATCTAGTGGACGAGGTAGGGGGGGTGGAAGGGGTGGATATATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGACTGTTTGGCTGGTTTGACTTTTGTAATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGGCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTATCTTTTATGTGATGAAGACATTGGGGGTCAAAAATCTAAAAAAGCCAAAGAACTGGGTACTAGCTTCCTCACTGAGGATGGGCTGTTTGATATGATCCGCACATCAAAACCTGCAAAAGCTCCTTCACAAGAAGAATCAAAAAAATTGGTGAAGAAGGTTGTTGCAACCCATTCAGAAAGTCCTCAGAAAGCTGGAGCTAAGGTCTCCCAATCTTCTGGCTCAGCTTCTAGGCCAGTCAAGCCTAAGAAAGAAAGTTCTGTACAGTCTTCCTTTATGTGGACAGAGAAGTATCGACCTAAGGTTCCAAATGACATCATAGGGAATCAGTCAATTGTTAAGCAGCTTCATGATTGGTTGGCAAATTGGAATGAGCAATTTCTTGATGGTGGAAATAAAAGAAAGGGGAAAAAACAAAATGACACTGGTTCCAAAAAAGCTGTCTTACTAAGTGGAACCCCTGGTATTGGAAAAACCACTTCAGCAAAGTTGGTCAGTCAGATGCTTGGTTTCCAAGCCATAGAGGTTAATGCTAGTGACAGCCGTGGGAAGGCTGATAACAAAATTGTTAAAGGAATCAGTGGAAGCAATGCAAACTCTATTAAGGAACTTGTCACCAATGAGTCCTTGGGTGTTAATATGGATCGGGCAAAGCATTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGCATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCCATTATCTGCATTTGCAATGACCGCTACAGCCAGAAACTGAAAAGTCTTGTGAATTACTGTTTGCTTCTCAGCTTTCGTAAACCTACAAAGCAACAGATGGCAAAGAGGTTGATGCAAGTTGCAAAAGCTGAGGGGCTTCAAGTCAATGAGATTGCTCTTGAGGAGCTGGCTGAAAGAGTTAATGGAGATATGCGCATGGCACTAAATCAGCTACACTATATGAGCCTCTCCATGTCAGTTATTAACTATGATGATATTAGGCAGCGGCTTTTATCTAGCTCGAAGGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTAAAAATGGATGAGAGGATCAACCTTAGCATGAGTGATCCTGACCTTGTTCCTCTTCTCATTCAGGAAAATTATATTAATTATAGACCAAGCTCAGCTGGTAAGGATGAGAATGATGTGAAGCGCATGAAGCTAATTGCCCGTGCTGCTGAGTCTATTGCTGATGGAGATATAATGAATGTACAGATTCGAAGATATCGACAATGGCAGCTCTCTCAAGCTAGTTCTCTCGCTTCGAGTATAATTCCTGCTTCATTGTTGCGTGGGCAAAGAGAAATACTCGAACAGGGAGAACGAAATTATAATCGGTTTGGTGGGTGGCTGGGGAAAAACTCAACAATGGGCAAAAACTTGAGGCTTTTGGAAGATCTTCATGTTCACATTCTTGCTTCTCGCGAATCTAGTTCAGGAAGGGACACCCTTCGTATGGAATATCTTGCGCTATTTCTTAAACAATTGACAGGACCACTGCGAGTCTTGCCTAAGGATGAAGCTGTTCAGAAGGTTGTGGAATTTATGAATATATACTCAATCAGTCAGGAGGATTTTGATACTATTGTAGAGTTATCAAAGTTCAAGGGTCATCCGAATCCACTAGATGGCATACATCCTGCTGTTAAATCTGCACTGACAAAAGCATACAAAGAAGAAAGCAAATCTCGGATGGTACGAGCTGCAGATCTAGTCACTCTTCCTGGAATGAAAAAGGCCCCTAAGAAGCGAATTGCTGCTATTTTAGAACCAACCGAGGAAGTATTGGAAAAGGGCGAAGGTGACGGCACTTTGGGAGAGAGTGAAGAAGAGAACTCCTCTGACACAGATGAGTTGGATGGTGCCACCACTGGCGAGAAGCTGCAGTCAGAACTTCAAAGTTTAAACTCAAAGGCCATGCGAGTAGAGTTGGATTTGAAGGGAATGGGAAATTCAGGGGCTGAGAAGAAACCAGCCGGAAGAGGTAAAGGTGCTTCTGCATCCGCAGAGAAGAGCGGGAAAGCTTTAAGAGGTGGGGCAAAAAGAAAGAGGTGA | 3054 | 0.4286 | MTDKLQYIWAKKGAVHVMDKSDDFFLLKFEDEGDYKHALFEGLKSICLHGFVSVFLRGSRLVFSDLHSDIRKWFMKSHDKSNATESKPTNQMKPASVKPQPEKPVAGGEDGSGRRKTSKYFATDKNKPKDEKEAQELPAKRKNPKDSEELQKPPPKKIHLDDEDDDSALLTSRKKSTDTTPAKKLKSGSGRGIPLKSPYLEESDEDDDKDAVSPLKSGGRGRGGRGALAQSSSGRGRGGGRGGYMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGQKSKKAKELGTSFLTEDGLFDMIRTSKPAKAPSQEESKKLVKKVVATHSESPQKAGAKVSQSSGSASRPVKPKKESSVQSSFMWTEKYRPKVPNDIIGNQSIVKQLHDWLANWNEQFLDGGNKRKGKKQNDTGSKKAVLLSGTPGIGKTTSAKLVSQMLGFQAIEVNASDSRGKADNKIVKGISGSNANSIKELVTNESLGVNMDRAKHSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVAKAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRQRLLSSSKDEDISPFTAVDKLFGFNAGKLKMDERINLSMSDPDLVPLLIQENYINYRPSSAGKDENDVKRMKLIARAAESIADGDIMNVQIRRYRQWQLSQASSLASSIIPASLLRGQREILEQGERNYNRFGGWLGKNSTMGKNLRLLEDLHVHILASRESSSGRDTLRMEYLALFLKQLTGPLRVLPKDEAVQKVVEFMNIYSISQEDFDTIVELSKFKGHPNPLDGIHPAVKSALTKAYKEESKSRMVRAADLVTLPGMKKAPKKRIAAILEPTEEVLEKGEGDGTLGESEEENSSDTDELDGATTGEKLQSELQSLNSKAMRVELDLKGMGNSGAEKKPAGRGKGASASAEKSGKALRGGAKRKR | 1017 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa02g3451 | 1017 | MobiDBLite | consensus disorder prediction | 248 | 263 | - | - | |
| Bisa02g3451 | 1017 | FunFam | Replication factor C subunit 1 | 400 | 588 | - | - | |
| Bisa02g3451 | 1017 | Coils | Coil | 958 | 978 | - | - | |
| Bisa02g3451 | 1017 | MobiDBLite | consensus disorder prediction | 371 | 399 | - | - | |
| Bisa02g3451 | 1017 | CDD | AAA | 449 | 552 | - | - | |
| Bisa02g3451 | 1017 | FunFam | Replication factor C subunit 1 | 661 | 770 | - | - | |
| Bisa02g3451 | 1017 | FunFam | Replication factor C subunit 1 | 240 | 343 | - | - | |
| Bisa02g3451 | 1017 | MobiDBLite | consensus disorder prediction | 924 | 938 | - | - | |
| Bisa02g3451 | 1017 | MobiDBLite | consensus disorder prediction | 344 | 399 | - | - | |
| Bisa02g3451 | 1017 | ProSiteProfiles | BRCT domain profile. | 264 | 345 | IPR001357 | - | |
| Bisa02g3451 | 1017 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 400 | 649 | IPR027417 | - | |
| Bisa02g3451 | 1017 | CDD | HLD_clamp_RFC | 589 | 647 | - | - | |
| Bisa02g3451 | 1017 | MobiDBLite | consensus disorder prediction | 924 | 1017 | - | - | |
| Bisa02g3451 | 1017 | Gene3D | - | 400 | 588 | IPR027417 | - | |
| Bisa02g3451 | 1017 | Pfam | ATPase family associated with various cellular activities (AAA) | 456 | 555 | IPR003959 | GO:0005524|GO:0016887 | |
| Bisa02g3451 | 1017 | CDD | BRCT_RFC1 | 264 | 342 | - | - | |
| Bisa02g3451 | 1017 | Gene3D | - | 661 | 770 | - | - | |
| Bisa02g3451 | 1017 | Gene3D | - | 589 | 659 | - | - | |
| Bisa02g3451 | 1017 | SMART | BRCT_7 | 266 | 344 | IPR001357 | - | |
| Bisa02g3451 | 1017 | Pfam | Replication factor RFC1 C terminal domain | 729 | 891 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
| Bisa02g3451 | 1017 | Pfam | BRCA1 C Terminus (BRCT) domain | 266 | 341 | IPR001357 | - | |
| Bisa02g3451 | 1017 | SMART | AAA_5 | 452 | 590 | IPR003593 | GO:0016887 | |
| Bisa02g3451 | 1017 | PIRSF | RFC1 | 75 | 992 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Bisa02g3451 | 1017 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 77 | 997 | - | - | |
| Bisa02g3451 | 1017 | MobiDBLite | consensus disorder prediction | 349 | 363 | - | - | |
| Bisa02g3451 | 1017 | MobiDBLite | consensus disorder prediction | 79 | 265 | - | - | |
| Bisa02g3451 | 1017 | Gene3D | BRCT domain | 241 | 343 | IPR036420 | - | |
| Bisa02g3451 | 1017 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 660 | 805 | IPR008921 | GO:0003677|GO:0006260 | |
| Bisa02g3451 | 1017 | FunFam | Replication factor C subunit 1 | 589 | 660 | - | - | |
| Bisa02g3451 | 1017 | SUPERFAMILY | BRCT domain | 264 | 345 | IPR036420 | - | |
| Bisa02g3451 | 1017 | MobiDBLite | consensus disorder prediction | 108 | 181 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa02g3451 | Bisa-ChrBisa02 | 85695843 | 85716997 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa02g3451 | 68 | 971 | Core DNA Replication Machinery Family | AT5G22010 | 70.022 | 0.0 | 1158 |