Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3425 ATGGAGCTTCGTTCTCGCAGACGACTCTCTAGTCCTAAAATTGATGCAACAGGAATTGAACAACAGCCTAGAGATGCATCTGGGAAATCTAAAACTTCTAGCCATTGCAGCGACAATGCAGATGAAGATGTCCGTGTTCTATCTTCAGATTCAGATTTTAATTATGAAGATGAAGGCGTTGTGAACTACCTTTTTGACTTAAATGAAGAACCTACTTCAAGCTTTTGTGCTTCTGATGGAGAAGACAACACCTCTGACTTATCTGATAGCTGCAAGCCTTCATCTAGTAAGAAAAGAATTGTGTATTCCAGAAAGAAAAGGAGAAAATCCAGTTCAAAATATGGAGAGTCCAGTCAGGAAGTTGCAGTGTTGGAGCATGGGGATAATAATGGCTCTGCAATGGTTCAGAATGAAATACTTGACCATGGTTTGGTTAGGCCAAGAAGGAAGAAATATGCAAGAAAAGCAAGAAATGATGATTCTAGGCCACCACTGTTGTGGAATATATGGGAAGAGCAGCATGAGAGATGGATTGATGAGAATTTAGCAAAGGATGCTGACCTGGATCATCAGAGTGAACTAATGAATGAAACTGCTGAGGCATCCTCTGAACTTACTATGCCTTTACTAAGATACCAAAAAGAATGGCTAGCATGGGCTCTGAAACAGGAAAACTCTGCAGTTAGAGGGGGTATTCTTGCAGATGAAATGGGGATGGGAAAGACTATTCAAGCAATTGCCCTTGTCCTTGCCAAACGAGAATTCCAGCAAATGGCACCTGAACCAGATGATCCCTCATCTTTGCCAGGTACATCCACAGACTTACCTGCGGTCAAAGGAACACTTGTTATTTGTCCTGTGGTTGCAGTCACTCAGTGGGTTAGTGAGATTGATAGGTTTACTTTGAAAGGAAGCACCAAGGTTTTGGTTTATCATGGGGCTAAGAGAGGGAAGAGTAGCGAACAGTTCTCAGAGTATGATTTTGTAATAACTACGTACTCTATTGTTGAGTCTGAGTACAGGAAGTATATGATGCCTCCCAAGGAGCAGTGCCCATACTGTGGCAAACTTTTTAACCATAAGAAGTTATCTATTCATCAGAGATATTTTTGTGGGCCTAATGCTGAGAGAACAGAAAAACAATCAAAACAATTTAAGAAAAAGAAAAGAGAAATTAATAAAAAGAAGATCAAGGAACATGAGAATGGCAAAGATCAGGGAGCTGACATGAATACAAAGTTTTGGAGTGAAGAATTGGAGAAGGGTTTTAACAGATTAAAAGAAAAGGAAACAAGCATGAGAGCGGACAATTCAGACGCCACATGTAGGGAGAAGTCACTTCTGCATGCTGTAAAGTGGCAGCGGATCATATTGGATGAGGTACGGTTCCTACAAATAGTTCCTTATTCCTATTACTTGTGCAAGGATTGTGATTGCAGGACTCTCGATCACAGTGCCTCTAAAGAATGTTCAATCTGCCAGCACAGTTCTGTAAGACATTTCTGTTGGTGGAATAAATATGTTGCCACACCAATTCAATTATATGGAACTGGCGATATTGGAAGAAGGGCTATGATATTGCTTAAACACAAAGTTTTGAAGAACATAGTACTAAGACGCACTAAAGTAGGCAGGGCTGCTGATCTCGCACTTCCACCTAGGATTGTCTCCTTGAGGAAGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCATTATACAATGAAAGTCAGGCACAGTTTAATACATATGTCGAATCAAATACTTTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGGCTGAGACAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAACTGCAGCATTAAGAGGTGGAGATGAGGTTAGCAATGGCAATGTTGAACAACTTTGTGGACTTTGTCATGACCCTGTTGAAGATCATTTGGTTACCTTATGTGAGCACATATTTTGCAAGGCATGCCTGATAGACTTCTCTGCATCCTTGGGACGTGTATCGTGCCCTTCATGCTCTAAATTACTTACAGTTGATTTAACTTCAAACAAGGATGTCGGGGATCAGTCTAATAAAACAACAATTAAGGGTTTCAGATCCTCGAGCATTTTGAACAGAATTTGGCTTGAGAACTTTCAGACAAGTACTAAGATAGAGGCTTTGGTCATAAAGACAACGAGAGAAGAAATTAGATTTATGGTAGAAAGAGATGGTTCTGCAAAAGGGATTGTTTTTAGCCAGTTCACTTCTTTCTTGGATCTCATAAACTACTCCCTGCTCAAGTCTGGTGTGTCTTGTGTTCAATTGAACGGAAGCATGTCATTGGCTGCTCGGGACGCTGCCATTAAGAAATTTACTGACGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAAGCTGGAGGAGTTGCTCTCAATTTGACGGTGGCATCACATGTTTTCCTTATGGACCCTTGGTGGAACCCAGCTGTGGAGCGTCAGGCTCAAGATAGGATTCACCGAATAGGGCAATATAAACCAATCAGAATTGTTAGGTTTGTCATTGAAAACACTATTGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAACTTGTATTTGAAGGGACTATAGGCGGCTCTGCCGATGCTCTGGGGAAATTGACGGAGGCAGACATGAAATTCCTATTTGTTACCTGA 2694 0.4083 MELRSRRRLSSPKIDATGIEQQPRDASGKSKTSSHCSDNADEDVRVLSSDSDFNYEDEGVVNYLFDLNEEPTSSFCASDGEDNTSDLSDSCKPSSSKKRIVYSRKKRRKSSSKYGESSQEVAVLEHGDNNGSAMVQNEILDHGLVRPRRKKYARKARNDDSRPPLLWNIWEEQHERWIDENLAKDADLDHQSELMNETAEASSELTMPLLRYQKEWLAWALKQENSAVRGGILADEMGMGKTIQAIALVLAKREFQQMAPEPDDPSSLPGTSTDLPAVKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKRGKSSEQFSEYDFVITTYSIVESEYRKYMMPPKEQCPYCGKLFNHKKLSIHQRYFCGPNAERTEKQSKQFKKKKREINKKKIKEHENGKDQGADMNTKFWSEELEKGFNRLKEKETSMRADNSDATCREKSLLHAVKWQRIILDEVRFLQIVPYSYYLCKDCDCRTLDHSASKECSICQHSSVRHFCWWNKYVATPIQLYGTGDIGRRAMILLKHKVLKNIVLRRTKVGRAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYVESNTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQTAALRGGDEVSNGNVEQLCGLCHDPVEDHLVTLCEHIFCKACLIDFSASLGRVSCPSCSKLLTVDLTSNKDVGDQSNKTTIKGFRSSSILNRIWLENFQTSTKIEALVIKTTREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLLKSGVSCVQLNGSMSLAARDAAIKKFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSADALGKLTEADMKFLFVT 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3425 897 Pfam SNF2-related domain 223 461 IPR000330 GO:0005524|GO:0140658
Bisa02g3425 897 MobiDBLite consensus disorder prediction 75 122 - -
Bisa02g3425 897 Gene3D - 211 351 IPR038718 -
Bisa02g3425 897 Coils Coil 375 395 - -
Bisa02g3425 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 540 IPR027417 -
Bisa02g3425 897 CDD DEXDc_SHPRH-like 209 361 - -
Bisa02g3425 897 CDD SF2_C_SNF 720 852 - -
Bisa02g3425 897 Gene3D - 552 895 IPR027417 -
Bisa02g3425 897 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 722 887 IPR001650 -
Bisa02g3425 897 MobiDBLite consensus disorder prediction 1 51 - -
Bisa02g3425 897 Pfam Helicase conserved C-terminal domain 741 841 IPR001650 -
Bisa02g3425 897 MobiDBLite consensus disorder prediction 75 97 - -
Bisa02g3425 897 ProSiteProfiles Zinc finger RING-type profile. 638 678 IPR001841 -
Bisa02g3425 897 MobiDBLite consensus disorder prediction 35 51 - -
Bisa02g3425 897 SUPERFAMILY RING/U-box 635 682 - -
Bisa02g3425 897 SMART ultradead3 205 515 IPR014001 -
Bisa02g3425 897 SMART helicmild6 758 841 IPR001650 -
Bisa02g3425 897 ProSitePatterns Zinc finger RING-type signature. 653 662 IPR017907 -
Bisa02g3425 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 708 IPR013083 -
Bisa02g3425 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 551 895 IPR027417 -
Bisa02g3425 897 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 461 895 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3425 Bisa-ChrBisa02 85216845 85224525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3425 147 897 RAD5 or RAD16-like Gene Family AT1G05120 61.742 0.0 985
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa02g3425 SNF2_N 2.4e-29 CL0023