Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3397 ATGCCTGCGGGGCTAATGACTCACCCAAGAAACATGCCGTCCATGATTGGAAGAAACAACAACGTTGTTGGTGGCTTTGGATCATCGTCCTCAGGCCTCACTCTTGCTCAGCAGCCAAACACGATGGAAGGTCATCAGCTGCACCCGCTGGACATGGCCCCCAACACGTCCGAGAGCGACATCCCCAGAATACCAGACGATGACTTCGACAGCGCCACCAAGTACGGCAGCGATAACCACGAAGGCGGCGGCGCCTCTGGCGACGACCAAGACCAACGCCCCAAGCGGAAGCGATACCACCGCCACACCCTGCACCAGATCCAAGAAATGGAAGCTTTCTTTAAGGAGTGCCCACACCCAGATGACAAGCAAAGGAAGGAGCTAAGTCGGGAATTAGGGTTGGAGCCATTGCAGGTCAAGTTTTGGTTCCAAAACAAGCGTACCCAGATGAAGACGCAACATGAGAGGCATGAGAATTCACACCTGAGAGAGGAAAATGAAAAGCTGCGAGTGGACAACATGAGGTACAGAGAAGCTCTTAGCAATGCGTCCTGTCCCAATTGTGGAGGACCAACCGCTATTGGAGAAATGTCCTTCGATGAGCATAATTTGAGACTCGAAAATGGTCGCCTGAGAGAAGAGATTGATAGGATATCAGCAATTGCTGCCAAGTACGTAGGAAAGCCAGTGGTGAACTATCCCCTCCTCTCTCCTCCTTCAGTTCAACCTCGTCCTCTAGACCTTGGGGGTGGTGGTGGTGGTGGTTATGGTGGACAGGCAGGGATGGGTGGGGACATGTACGGAGCCGGAGACCTCTTAAGGTCAATAAGTGGGCTCGCCGAAGCCGATAAGCCGATGATAATAGAGCTGGCTGTTGCGGCTATGGAGGAGCTTGTGAGGATGGCTCAAATGGGTGAGCCACTTTGGATGACCACCCTCGACGGCACCACCACTGTGCTCAATGAGGACGAATACGTCAGGTCGTTTCCTAGAGGAATTGGTCCCAAACCCACTGCCTTGGAATGTGAGGCTTCTCGGGAAACCGCTGTTGTCATCATGAACCATATCGACCTTGTCGAGATTCTCATGGATGTGAACCAATGGTCGACGGTATTTTCTAGCATAGTCTCAAGAGCAATGACGATGGAAGTGCTTTCAACAGGCGTGGGTGGGACCTACAACGGTGCCTTGCAAGTGATGACAGCAGAGTTGCAAGTGCCATCGCCTCTTGTGCCAACTCGAGAGAGTTATTTCGTGAGGTACTGTAAACAGCACGCCGACGGGACATGGGCTGTGGTGGATGTGTCTTTGGATAACTTGCGCCCCACTCCTTCCGTCAGATGTAGAAGAAGGCCTTCTGGCTGCTTGATTCAAGAAATGCCCAATGGCTATTCAAAGGTGACATGGATTGAGCATGCAGAAGTGGACGATAGAGGAGTACATAGTCTATACAAGCAACTCGTGAGTTCAGGGCATGCGTTTGGGGCAAAACGTTGGGTTGCCACCTTGGATAGACAGTGCGAAAGGCTTGCTAGTGCCATGGCATCCAACGTTCCCACGGCTGATGTTGGGGTGATAACGAACCAAGATGGGAGGAGGAGTATGTTGAAGCTGGCGGAGAGGATGGTGATAAGCTTCTGTGGGGGAGTGGGTGCTTCTACTGCTCACACGTGGACTACATTGTCTGGAACCGGGGCGGATGATGTGCGGGTCATGACCCGGAAGAGCGTGGATGGCCCGGGAAGACCTCCCGGTGTTGTTCTAAGTGCTGCAACATCTTTCTGGCTTCCGCTTCCCCCTAGAAGAGTCTTTGATTTCCTCCGCGATGAGAACTCCAGAATCGAGTGGGATATTCTTTCCAACGGTGGGGTAGTCCAAGAAATGGCTCACATAGCTAATGGACGCGATACGGGAAACTGTGTGTCTCTGCTTCGAGTGAATAGTGCAAATTCGAGCCAAAGCAACATGTTGATATTGCAAGAGAGTTGTACGGATCCAACGGGGTCTTTCGTGGTATTCGCTCCTGTAGATACCGTAGCGATGAACGTAGTCCTCAATGGAGGGGACCCTGCCTACGTGGCACTCCTTCCTTCGGGATTTGCTATCCTCCCCGATGGAAGCACGGCCCATGGAGGTGGCATTGGTGAAACAGGCCACGGTGGATCCCTCTTGACCGTTGCTTTTCAAATCTTGGTTGACTCTGTTCCAACCGCCAAGCTCTCTCTCGGATCTGTTGCTACCGTCAATAACCTCATTGCTTGCACTGTCGACAGAATCAAGGCTTCTTTGTCTGGTGAACCTGCCTGA 2307 0.5236 MPAGLMTHPRNMPSMIGRNNNVVGGFGSSSSGLTLAQQPNTMEGHQLHPLDMAPNTSESDIPRIPDDDFDSATKYGSDNHEGGGASGDDQDQRPKRKRYHRHTLHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENSHLREENEKLRVDNMRYREALSNASCPNCGGPTAIGEMSFDEHNLRLENGRLREEIDRISAIAAKYVGKPVVNYPLLSPPSVQPRPLDLGGGGGGGYGGQAGMGGDMYGAGDLLRSISGLAEADKPMIIELAVAAMEELVRMAQMGEPLWMTTLDGTTTVLNEDEYVRSFPRGIGPKPTALECEASRETAVVIMNHIDLVEILMDVNQWSTVFSSIVSRAMTMEVLSTGVGGTYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPTPSVRCRRRPSGCLIQEMPNGYSKVTWIEHAEVDDRGVHSLYKQLVSSGHAFGAKRWVATLDRQCERLASAMASNVPTADVGVITNQDGRRSMLKLAERMVISFCGGVGASTAHTWTTLSGTGADDVRVMTRKSVDGPGRPPGVVLSAATSFWLPLPPRRVFDFLRDENSRIEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDPTGSFVVFAPVDTVAMNVVLNGGDPAYVALLPSGFAILPDGSTAHGGGIGETGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVDRIKASLSGEPA 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3397 768 CDD START_ArGLABRA2_like 284 508 - -
Bisa02g3397 768 Pfam START domain 290 509 IPR002913 GO:0008289
Bisa02g3397 768 MobiDBLite consensus disorder prediction 61 75 - -
Bisa02g3397 768 Gene3D - 348 506 IPR023393 -
Bisa02g3397 768 MobiDBLite consensus disorder prediction 13 44 - -
Bisa02g3397 768 SMART HOX_1 94 157 IPR001356 GO:0003677
Bisa02g3397 768 SUPERFAMILY Bet v1-like 282 511 - -
Bisa02g3397 768 Coils Coil 159 179 - -
Bisa02g3397 768 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Bisa02g3397 768 Gene3D - 84 170 - -
Bisa02g3397 768 ProSiteProfiles START domain profile. 280 512 IPR002913 GO:0008289
Bisa02g3397 768 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Bisa02g3397 768 CDD homeodomain 95 154 IPR001356 GO:0003677
Bisa02g3397 768 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 92 763 IPR042160 -
Bisa02g3397 768 FunFam Homeobox-leucine zipper protein HDG1 84 169 - -
Bisa02g3397 768 SUPERFAMILY Bet v1-like 529 760 - -
Bisa02g3397 768 FunFam Homeobox-leucine zipper protein GLABRA 2 289 508 - -
Bisa02g3397 768 SMART START_1 289 509 IPR002913 GO:0008289
Bisa02g3397 768 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Bisa02g3397 768 MobiDBLite consensus disorder prediction 1 99 - -
Bisa02g3397 768 SUPERFAMILY Homeodomain-like 84 153 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3397 Bisa-ChrBisa02 84780417 84786760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3397 66 768 Homeobox Transcription Factor Family AT1G05230 78.249 0.0 1115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa02g3397 START 9.7e-60 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0982 12 15746886 15751326 Bisa02g3397 02 84780417 84786760 CCT
Bisa02g3397 02 84780417 84786760 Bisa02g3397 02 84780417 84786760 ECH