Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3394 ATGAACGACCTCCTATCTAATTCATTTGATGGCGATGGTGGAGATCGGCCTTCTAGACAAAGTGATATTGAAATGGGAATGCAGGTTCCAAGGAGCAATTCTGATATGGGAATGGATGCTTTTAATAAACAGATTCAAGAGCTTGATAAACAGGTTGATAAGATAGCAGGGCTACTACAAAAACTAAAGGAAGCTAATGAGGAGTCAAAATCTGTTACAAAAGCTTCTGCCATGAAAGCTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGCTTGCACGTATGGTCAAAGCAAAAATAGAAGCTTTAAATAAAGATAACCTTGCCAATCGACAAAAGCCTGGCTGTGAGAAGGGAACTGGTATTGACAGAGCAAGGATGAACATGACAAATGCCTTGACAAAAAAGTTTAAGGATCTAATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATTACAGTTACGGGAACTAGACCAGATGATGAGACAATTGACCACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGGAGGCCATGCTAGAAACAGGCCGAGGACAGGTGTTAAATACAGTGGAAGAAATTCAGGAGAGGCATGATGCTGTGAAAGAAATTGAGAAAAAGCTTCTTGATTTACATCAGATTTACCTTGACATGGCAGTGTTAGTGGACGCTCAAGGAGAAATTTTAGACAACATTGAAAGTCAGGTCAACAATGCAGTCGATCATGTCCAGAGAGGGACAACTGCTCTACAAAGTGCTAAGAAACTCCAGAAGAACTCTCGAAAATGGATGTGCATTGCTATCATTATACTCTTGATAATAGTAGCTATTATAGTTGTTGGTGTTATCCAACCTTGGAAGAGTAACAAGGGCGCTTGA 930 0.3978 MNDLLSNSFDGDGGDRPSRQSDIEMGMQVPRSNSDMGMDAFNKQIQELDKQVDKIAGLLQKLKEANEESKSVTKASAMKAIKKRMEKDIDEVGKLARMVKAKIEALNKDNLANRQKPGCEKGTGIDRARMNMTNALTKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQEAMLETGRGQVLNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTTALQSAKKLQKNSRKWMCIAIIILLIIVAIIVVGVIQPWKSNKGA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3394 309 MobiDBLite consensus disorder prediction 1 37 - -
Bisa02g3394 309 Coils Coil 45 75 - -
Bisa02g3394 309 Pfam SNARE domain 244 296 IPR000727 -
Bisa02g3394 309 Gene3D - 33 162 - -
Bisa02g3394 309 SMART tSNARE_6 203 270 IPR000727 -
Bisa02g3394 309 PANTHER SYNTAXIN 36 289 IPR045242 -
Bisa02g3394 309 SMART SynN_4 33 159 IPR006011 GO:0016020
Bisa02g3394 309 FunFam Syntaxin 132 33 162 - -
Bisa02g3394 309 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Bisa02g3394 309 Gene3D - 201 301 - -
Bisa02g3394 309 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Bisa02g3394 309 Pfam Syntaxin 41 243 IPR006011 GO:0016020
Bisa02g3394 309 CDD SynN 38 195 IPR006011 GO:0016020
Bisa02g3394 309 FunFam Syntaxin 132 201 301 - -
Bisa02g3394 309 CDD SNARE_syntaxin1-like 207 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3394 Bisa-ChrBisa02 84677983 84682849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3394 1 309 SNARE and Associated Proteins AT3G03800 61.489 1.01e-126 362