Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3275 ATGTCAGATCATCACGTGAATAAATATTCTTTGATTAACAGGGTCGTTATTCATTTTGCCATTCTGGCTAGAATGAACCTCTGCCGCCATCAAACTGTCGGTGTCGGCAACCCCCCCCCCCCCAAACTCCTCCTCTTCTTCTTCTTCTTCTTCACTCGCCGGAGCTTTGAAACATTGGTGGTGCGCCACCCCATTTCGCCGAAACACACAATGCAGCGCCACCGTAGCTCCCCCGTCATTCTCAGTCTAGTGTTCATCAATGTCCTAGTGGTAACTGCACAGGGACAGGTCAGACACCGGGTTATAGACCCGCATTGGTACTCGGGTACAGCCACGTGGTACGGCGACCCGGAAGGCGATGGGAGCACCGGAGGGGCTTGCGGGTATGGGTCATTGGTGGACGTGAAGCCGTTGAAGGCACGTGTGGGGGCGGTGGGTCCGGTGCTGTTCATGAACGGAGAAGGGTGTGGGGCGTGCTATAAGGTGAGGTGCTTGGACAGAAGCATATGTTCGAGGCGAGCCGTGACGGTGATTATTACGGACGAGTGCCCCGGGTGCCCCTCCGACCGGACCCACTTCGACCTCAGTGGCGCCGCCTTTGGACGCATGGCTCGCGCCGGTGATAACTCTCAGCTCCGGGACCGTGGTCAAATCCCTATCATTTACCGAAGAACACAATGTAAATATCCTGGCAGAAACATTGCCTTCCATGTTAATGAAGGTTCCACACCTTTTTGGCTATCACTTTTGGTGGAGTATGAGGATGGAGATGGAGACATTGCCTCTATGCATATTCAACAAGCAGGGTCAAGTGAGTGGCTTCAGATGAATCATCTATGGGGTGCGAATTGGAACATTATTGGAGGGCCTTTAAGGGGACCTTTCTCTGTGAAACTAAGCACTTCCACTGGGAAAACTCTCTCTGCCAGAGATGTCATCCCCAGCAATTGGTCTCCAAAAGCCACTTACACCTCTCGCCTCAATTTCTTCCACTAG 996 0.5291 MSDHHVNKYSLINRVVIHFAILARMNLCRHQTVGVGNPPPPKLLLFFFFFFTRRSFETLVVRHPISPKHTMQRHRSSPVILSLVFINVLVVTAQGQVRHRVIDPHWYSGTATWYGDPEGDGSTGGACGYGSLVDVKPLKARVGAVGPVLFMNGEGCGACYKVRCLDRSICSRRAVTVIITDECPGCPSDRTHFDLSGAAFGRMARAGDNSQLRDRGQIPIIYRRTQCKYPGRNIAFHVNEGSTPFWLSLLVEYEDGDGDIASMHIQQAGSSEWLQMNHLWGANWNIIGGPLRGPFSVKLSTSTGKTLSARDVIPSNWSPKATYTSRLNFFH 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3275 331 Pfam Lytic transglycolase 147 220 IPR009009 -
Bisa02g3275 331 PRINTS Major pollen allergen Lol pI signature 301 318 IPR005795 GO:0005576|GO:0019953
Bisa02g3275 331 PRINTS Major pollen allergen Lol pI signature 182 197 IPR005795 GO:0005576|GO:0019953
Bisa02g3275 331 PRINTS Major pollen allergen Lol pI signature 236 251 IPR005795 GO:0005576|GO:0019953
Bisa02g3275 331 PRINTS Major pollen allergen Lol pI signature 252 267 IPR005795 GO:0005576|GO:0019953
Bisa02g3275 331 PRINTS Major pollen allergen Lol pI signature 204 219 IPR005795 GO:0005576|GO:0019953
Bisa02g3275 331 Gene3D - 91 227 IPR036908 -
Bisa02g3275 331 FunFam Expansin B3 92 228 - -
Bisa02g3275 331 SUPERFAMILY PHL pollen allergen 232 325 IPR036749 -
Bisa02g3275 331 SMART dpbb_1 142 222 IPR007112 -
Bisa02g3275 331 PRINTS Expansin/Lol pI family signature 123 141 IPR007118 GO:0005576
Bisa02g3275 331 PRINTS Expansin/Lol pI family signature 311 325 IPR007118 GO:0005576
Bisa02g3275 331 PRINTS Expansin/Lol pI family signature 146 164 IPR007118 GO:0005576
Bisa02g3275 331 PRINTS Expansin/Lol pI family signature 215 231 IPR007118 GO:0005576
Bisa02g3275 331 PRINTS Expansin/Lol pI family signature 273 287 IPR007118 GO:0005576
Bisa02g3275 331 PRINTS Expansin/Lol pI family signature 105 120 IPR007118 GO:0005576
Bisa02g3275 331 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 124 232 IPR007112 -
Bisa02g3275 331 Pfam Expansin C-terminal domain 234 314 IPR007117 -
Bisa02g3275 331 PANTHER EXPANSIN-B3 86 329 - -
Bisa02g3275 331 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 245 325 IPR007117 -
Bisa02g3275 331 FunFam Beta-expansin 3 229 330 - -
Bisa02g3275 331 CDD DPBB_EXPB_N 106 227 - -
Bisa02g3275 331 Gene3D - 228 326 IPR036749 -
Bisa02g3275 331 SUPERFAMILY Barwin-like endoglucanases 102 231 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3275 Bisa-ChrBisa02 82162422 82168753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3275 78 267 Expansin Gene Family AT4G28250 67.358 1.07e-90 268