Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3238 ATGAATTCTCCGATCGGAGACGTCATTGACAACATCCCACCATGGAAGCTCCTCACTCGCCGTGCAGCCGCCGATGTCTACTCTGACTCGCCGCCGTTCTCTTCTGTTTCCGACAAGAGGAAATTCCTTCCGTACAACAAACGCATGGACGGCGGAGGCGGCAGCGGTGATGCTCTGGACGCTTACTCCTCCGACTACTTCCGCATGTACGAGTTCAAGGTCCGACGGTGCACTCGCAGCCGGAGCCACGACTGGACGGACTGTCCCTTCGCTCATCCCGGTGAGAAGGCTCGCCGGCGTGATCCCCGACGACACCACTACTCCGGCACCTTCTGCTCCGAGTACCGCCGCGGCGGAGGATGCAGCCGCGGCGACGCCTGCGAGTATGCACACGGGGTGTTTGAATGTTGGCTTCACCCGGAAAGGTACAGAACAGAGGCCTGTAAGGATGGGAAAAATTGTAAGCGAAAGGTATGCTTCTTCGCTCATACTCCTCGCCAATTACGGATTCTTCCTGTGAATTGTCCCAGTTCTTTGTCGCCTGATCGAATTCCAAGCAACAAGAACGAATTCTCGAACCCCTCGTCGGGATCAAACAATTGCTGTTTGTTCTGTCATTGCTCTGCTTTTAATTCTTCTCCGACCTCCACTCTGCTTGGGATGTCGCATTTGTCGCCACCGTTATCACCGTCATCGTCCTCCGTCTCCCCGCCTCTTTCTCCGGTGAAGCGCCGGTCATTTGCAAATTGGGTCTCCCCAATTTCTCAATACAGTGATCGATTCAGGGGATCCGAGACTTATTATCATGGGGTGTCTATGAACTACAAGGATGTGCTCGCTGAGCTGATGAGCTCAATGAAGGAGGATCTGAATTTCAGTGAAGCTTCTTCACCTGCAATTTCTTCCACTACCGTTAATAAACCTCCAAATCTGCCATGGCTTGATGATTCTAACTTCCACCGTGATGAATATGATCATTTCATTCTTTCACCTTCCACTTCTTTCAATTGTGAAGAACAGCAACAATTTATTCTTTCACCAATTTCTCAGACCCCAATAGCAACTTCAAGCTTTTCTTGCAGTGGGAAACTTTCAAGCAGGAAAATCTTCTGCAACGAGAGCAGAATTGTCTTTGCAGACCCAGATGTGGAATGGGTCAATGACCTGGTGATGTAG 1176 0.5077 MNSPIGDVIDNIPPWKLLTRRAAADVYSDSPPFSSVSDKRKFLPYNKRMDGGGGSGDALDAYSSDYFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRHHYSGTFCSEYRRGGGCSRGDACEYAHGVFECWLHPERYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNCPSSLSPDRIPSNKNEFSNPSSGSNNCCLFCHCSAFNSSPTSTLLGMSHLSPPLSPSSSSVSPPLSPVKRRSFANWVSPISQYSDRFRGSETYYHGVSMNYKDVLAELMSSMKEDLNFSEASSPAISSTTVNKPPNLPWLDDSNFHRDEYDHFILSPSTSFNCEEQQQFILSPISQTPIATSSFSCSGKLSSRKIFCNESRIVFADPDVEWVNDLVM 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3238 391 ProSiteProfiles Zinc finger C3H1-type profile. 107 134 IPR000571 GO:0046872
Bisa02g3238 391 SMART c3hfinal6 106 133 IPR000571 GO:0046872
Bisa02g3238 391 SMART c3hfinal6 142 165 IPR000571 GO:0046872
Bisa02g3238 391 Gene3D - 106 171 - -
Bisa02g3238 391 PANTHER UNKEMPT FAMILY MEMBER 58 390 IPR045234 -
Bisa02g3238 391 SUPERFAMILY CCCH zinc finger 105 136 IPR036855 GO:0046872
Bisa02g3238 391 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 112 132 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3238 Bisa-ChrBisa02 81617791 81618966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3238 62 237 C2H2 Transcription Factor Family AT5G12850 47.458 6.57e-49 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa02g3238 zf-CCCH 4.6e-06 CL0537