Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3234 ATGCCCGCGCAGAAGCGCTCCTTGCCGGAGTCTCTGGACGATGGGGAGGCTTCAGAGCTCTACAACCACCGCCATGCGAAGCAATCTCATCGCGACCGAGAGCCAAGAGGTGAGGAACAACGGGATGAGGAAGACGAGCAGGGGGAGCAAGATGAAGGGGAAGAAGCTGGGCAGCAAACCGAACAGGAACAGGATAAGGAGGACAAAGCAGAGGATTCTGAGGAGAGCCCATCGTCTGAACCTGAAGAGAAACCCGAATTTGTGTTTGTGGAACTTCCGGAAATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATCAAGAAAACGCGGACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCCATGCGGCTAGGGAATAATGAATGCCCTGCTTGCCGCACACATTGTGCAAGTCGTCGTTCTTTGAGAGATGATCCAAACTATGATGCCCTAATTGCAGCTTTATATCCAGATATTGAGAAGTATGAAGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAAACCCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTAGTTCAACGTCAATCTGAAGCACTGGTTAAGAGACGTACCAAAGATACACCACCAGGTGCATTTGTGACAAGATCACTGCGAAATCAGCGGAATGTTCATCCTAGGAGACAAAACCATGTAATTGATCCTCCGGGATCGGAAGACAATGAGGACGAAAATGAAAATAATGGAGAAAAGGACTCATCTTCCACTGATGAGAGGAGTACAGAACTCAGGCAGCGAAGGCGAAAGAGACGGACTAGAGTTCGTCCATCACAGCCCTCCTTGTCAATGGCAAGCCCTGATGGTGGATTTAACGAAAGTGATGTGGATATAATGAGAGAAAATCGGGGAATTTCTCCAAGGCAGATGTCAAAACCTCGAAAGCTTACTTGGGGAAGGGGAGGTTTTAGGAGTCACACACGACATGGCAGTGGCAGTGGTAGCAATAGCAAGAATTCCCGCAGTAGTCGCTTGTCAAAATTTGTTGATTATTTAAGAAGCTTAGATGAAAACACCGAAGAGTTAGATGTCCATCTCATGCTTGTTTCTTTGGACAAAGAAAGTACACCAACTTTGCAGCAGCCACACCTTTGCTGTCGGCCAACTTTGTCCGTCAGACACCTTTGTGAATATGTTGCTCGTCAAACCCCCTTGCTGGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGGTGCTGCCACACCACTGCTCATACCGATATGTCAGATGACGAGACTGCACGGTTGCTATACGATGAGCTAACAACGCTGATTGTAGATCCATGCAAAGATGACCTGGAGACGTTGCAAGTACATGAAACTTTGGCTGGGATTAGGTCCAAATGCATATCTAAAAGGGAGCATTTGATTCTTGCATACAGGAGGAAGGGAGATGTGCTTTGA 1467 0.4663 MPAQKRSLPESLDDGEASELYNHRHAKQSHRDREPRGEEQRDEEDEQGEQDEGEEAGQQTEQEQDKEDKAEDSEESPSSEPEEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKTRNKQIQASIAKVVQRQSEALVKRRTKDTPPGAFVTRSLRNQRNVHPRRQNHVIDPPGSEDNEDENENNGEKDSSSTDERSTELRQRRRKRRTRVRPSQPSLSMASPDGGFNESDVDIMRENRGISPRQMSKPRKLTWGRGGFRSHTRHGSGSGSNSKNSRSSRLSKFVDYLRSLDENTEELDVHLMLVSLDKESTPTLQQPHLCCRPTLSVRHLCEYVARQTPLLVEEVEILAVKGCCHTTAHTDMSDDETARLLYDELTTLIVDPCKDDLETLQVHETLAGIRSKCISKREHLILAYRRKGDVL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3234 488 CDD RING-HC_RING1-like 98 163 - -
Bisa02g3234 488 MobiDBLite consensus disorder prediction 195 345 - -
Bisa02g3234 488 SUPERFAMILY RING/U-box 93 155 - -
Bisa02g3234 488 MobiDBLite consensus disorder prediction 1 86 - -
Bisa02g3234 488 ProSiteProfiles Zinc finger RING-type profile. 101 141 IPR001841 -
Bisa02g3234 488 MobiDBLite consensus disorder prediction 9 40 - -
Bisa02g3234 488 MobiDBLite consensus disorder prediction 330 345 - -
Bisa02g3234 488 SMART ring_2 101 140 IPR001841 -
Bisa02g3234 488 PANTHER OS11G0578200 PROTEIN 1 484 IPR044592 -
Bisa02g3234 488 Pfam Zinc finger, C3HC4 type (RING finger) 100 140 - -
Bisa02g3234 488 MobiDBLite consensus disorder prediction 251 267 - -
Bisa02g3234 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 173 IPR013083 -
Bisa02g3234 488 ProSitePatterns Zinc finger RING-type signature. 117 126 IPR017907 -
Bisa02g3234 488 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3234 Bisa-ChrBisa02 81550378 81557828 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3234 94 164 C3H Transcription Factor Family AT3G23060 35.135 3.39e-07 50.8