Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3204 ATGGCGGAATCTGAGGAAACGGGGAAATTTGCTGATAACCAACAAACAGAACAAGTGTGCAGTTTCTTTAGAAAGCCAGCTAACAAGAAGAATATCAGAAAACGCACAATAGATAATGAAGATGACGAGGGGGGCTCAGATGAAAGCTCTTTGCTACACAGTCAGAGAAAGGTCATCAAGCCTGATAATAAATTGTTCTTTTCCACTGGGCCCTCTAAAAGCTCTAGATCCTCTGAACCTAGTGAAAAATCTGAAAAACAAGGGTTTCAGTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAGAGCAACAGCGATACTAGAAACTGAGACTGAGTTTTCTAAAGATGCCCGAGCTATTCGTGAGAGAGCTTTAAAGCAAGCAGAGGAGAAGTTGAAGGGAAAAGGCACAAGTTCTGGTGATGAAAAATTGTACAAGGGTATGAACAGTTACACAGATTACAAGGCTGGGTTTCGTAGAGAACAAACTATCTCTAGTGAGAAAGCCGGTGGGGCACATGGGCCTCTTAGGGCTTCATCTCATATAAGAGTGTCAGCGAGATTTGATTATCAGCCAGACATTTGTAAGGACTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCGTGTAAGTTTATGCATGACCGGGGTGATTATAAGTCTGGGTGGCAATTGGAGAAGGAATGGGAAGAAGCAGAGAAAGCAAGGAGGATGAGATTAGCTGCAGGGGAGGATCCAGATGAGGAGGCTGCTCAGTTGACAGATGAAGATGATGATGATTCGTTACCATTTGCCTGCTTTATTTGCAGGAAGCCTTTTGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTTTGTGAGCATTGTGCATTGAAGCATCATGCCAAGAACAAGAAGTGTTTTGTGTGTAATCAACCCACTCTTGGCATTTTTAACACAGCTCATGAGATACGCAAGAAGATGGTTGCAGAGGGCAAATAA 987 0.4286 MAESEETGKFADNQQTEQVCSFFRKPANKKNIRKRTIDNEDDEGGSDESSLLHSQRKVIKPDNKLFFSTGPSKSSRSSEPSEKSEKQGFQFESSKEIQVQHDSRATAILETETEFSKDARAIRERALKQAEEKLKGKGTSSGDEKLYKGMNSYTDYKAGFRREQTISSEKAGGAHGPLRASSHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKARRMRLAAGEDPDEEAAQLTDEDDDDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIRKKMVAEGK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3204 328 ProSiteProfiles Zinc finger RING-type profile. 268 306 IPR001841 -
Bisa02g3204 328 FunFam Zinc finger CCCH domain-containing protein 1 189 223 - -
Bisa02g3204 328 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 217 IPR000571 GO:0046872
Bisa02g3204 328 Pfam Zinc finger, C3HC4 type (RING finger) 267 309 - -
Bisa02g3204 328 MobiDBLite consensus disorder prediction 32 60 - -
Bisa02g3204 328 SUPERFAMILY CCCH zinc finger 190 222 IPR036855 GO:0046872
Bisa02g3204 328 PANTHER ZINC FINGER PROTEIN 183 15 326 IPR039971 -
Bisa02g3204 328 CDD RING-HC_RNF113A_B 261 314 - -
Bisa02g3204 328 SMART ring_2 268 305 IPR001841 -
Bisa02g3204 328 Gene3D - 189 223 - -
Bisa02g3204 328 MobiDBLite consensus disorder prediction 1 100 - -
Bisa02g3204 328 ProSitePatterns Zinc finger RING-type signature. 283 292 IPR017907 -
Bisa02g3204 328 SMART c3hfinal6 191 218 IPR000571 GO:0046872
Bisa02g3204 328 FunFam RING finger protein 113A 266 325 - -
Bisa02g3204 328 ProSiteProfiles Zinc finger C3H1-type profile. 191 219 IPR000571 GO:0046872
Bisa02g3204 328 MobiDBLite consensus disorder prediction 8 22 - -
Bisa02g3204 328 SUPERFAMILY RING/U-box 267 311 - -
Bisa02g3204 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 325 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3204 Bisa-ChrBisa02 81025246 81027088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3204 11 326 C2H2 Transcription Factor Family AT1G01350 69.716 1.45e-165 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa02g3204 zf-C3HC4_3 8.6e-09 CL0229