Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3167 ATGTCGCGGACTGTAGGGACGTCTATGCAGGAACTGGAGTATGAATCTCTTGCCACTCGAGTCCACGATTTGTTGAGTTCTGACGAGAACAAGCCTGATTTTAGAGAACTTGATCTGGGTTCTGCTATTTCGACAATGAAAACCCCCGCCGCAGTTAATGCCGCCGCCGGAGCTTCCAACACTCCGAGCTGCAGCAGAAACGCCATCGCCAAACTCCGCAAAAGACCAGATGGGGAGCCAAAAAACCACTCCGGCGAACTCACCGAGACCAACCCAAAAGCCTCCGACACCCACAGATTTGCTTTCGCAACTCGAAACTCCAAGCCGGGTCATCGCAGATCTGTTTCCGCCGGCGCCCCGTTAATATACTCCGGTGGAAGTTTTATCAGCACGGGGAACAATAGTTGCGCAAAAGGTCCAACTTCAGGGACCAATTTGACCGGCAATATCTGCCCGACGGGGAAGACACTCAAACCCGGTTTGGCGTCTCGACCGTCGTCGAATAGAACCGATGTTTTGGGTTCAGGAACGGTGAACTATGGCCGAGGTAACATAATGCGGGGTGGCGCAAAATTGGGGAATGGTGGGCACGTCGTTGTCGACGACAATGTCGCCCGAAATTCTCAGCCCGGAGGGGTTTCGGGCATTGTAAAGCGGGCAATGGGTAGCTCTGATCCAAAGGAGGTGAAAGAAGCTGGAAATGAACTGTACAGAAGCGGTTACTTTGCGGAGGCAGTGTCGTTGTATGATCGTGCTATTTCCCTATCGCCGGACAACCCGGCTTATCGGAGCAATCAGGCTGCGGCGTTGACGGCGCTGGGAAGGCTGGCGGCAGCGGCGAAGGAGTGTAAAGAGGCTGTGAAATTGGACGCTGGTTATGCCAGAGCGCACCAGAGACTTGCTTCTCTTTACTTGCGCTTTGGGCAGGTTGAGAATGCCCAGAGCCACCTCTGTGTCCCTGGAAAACAGGTGGATCCATCTGAACTTCGCAAGCTGAGGCTTTTGGAGAAGCATCTGAACCGATGTTCAGAGGCACGAAGGATTAGCGATTGGAAGAGTGCACTCAGGGAATCAGACGCAGCCACCGCCGTTGGAGCAGATTTCTCACCTCAGCTTGTTGCTTGCAAAGCCGAAGCTTATTTGAAGCTTCATCTACTAGAGGACGCTGAGACTACCCTCTCAAACATTCCAAAGCTGGAATGTTGCTGTCTGACCAAGTTCTTCGGTATGGTTGGGGATGCTTATGTCCCCTTTGTTCGAGCTCAGGTTGAGATGGCTCTTGGCAGGTTTGAGAATGCAGTAGCAGAAGCAGAAAAGGCAAGCTTGATAGATTACAGTAACGTGGAAGTTGCAAGAGTTGCAAGTGCTGTGAAAATGGTGGCGAGGGCTCGTTCTCGAGGCAACAGTCTATTTGGGGCCGGAAAATTCTCCGAAGCTTGCTCTGCTTATGGAGAAGGCCTCAGATATGACAGTTCCAACTATGTTCTATACTGCAATAGAGCCGTTTGTTGGTCTAAACTTGGACTATGGGAAAGAACTATTGAAGACTGCAATCAAGCTCTTAACACTCAACCAAACTGCATCAAGGCCCTTTTTCGCAGGGCCATCTCATACGCAAAGCTTGAAAAGTGGGCAGAGGCTGTGAAAGATTATGAGGATTTAAAGCGGGAACTTCCCAGAGACAGTGAAGTTGCAGAGTCTCTCCGTCAGGCTCATCTTGCGTTGAAGAAATCTCGTGGTGAAGTGTATAGTACAAAGCTTGGTGTTGAGGTTGAAGAGGTCTCTACATTAGATAGATTCAAAGCTGCAATTGCTTTTCCTGGTGTTTCGGTTATTTATTTCAAAGAGGCGTCTAATGAACTATGTGAAGAAATGTCGCCATTCATGAATATGCTGTGCGTTAGATACCCATCTGTTCAATTCACCAAGGTGGATGTCGAAGAGTGTAAGAGTATAGCAAAAGCTGAGAGCATAAGAACTGTGCCAGCATTCAAAATATATGCAAACGGAGAGAAGGTGAAGGAGATGATCAGGCCAAGCCATCAGTTATTGGAGAACTCAGTGAGGAATTCTAGTAGTGCTGAGAACCACGATGATGGAGTCGCAATCACAGACGCAAACGAACAAGGCGAGCTCCAGAAGACGACCGGTGAAGAACGACAAGTTGTCTTTGGAGCACTACCTCGATTTCCTTCACTCTCACCAAACCATAAATCTAAATATGAACCATCTCAATCAGGTTTTCTTCCTTGTATTTTTTTCATTCATGAATTCCTTATTTTTTTTGGGATTCGATTTCAGAGTTTCTTCCTCTGCAGCAACCATTGGTTCATTTTGCAGATCATCCATATTCACGGATTCAAGAAACTCCACAAACATTCCAAGAAGGCGTTGGTCGATGCTGCGGATGCGCTTGATCTGATGGATTTGCAGCGATCCACACTCAGGCAGAGCGTGTCTGCATTCGCAACCCTCACACTCGAGGACGCAATCGCTGATCTCAACGAATTAAGCTGGCAAGAGTGCTGTGTGACCTCCATATACAGTCTCAGTTCTTGCACAGAGAACTTCCCGCCTCCTGATCAGAGTCCGGAAGTCCCCAGACACTTGCAGATCATACCTCGAACCAAGGCTTCGGAAAAGACGGAGGATATTGATAGACTCCATGGCCTCCTCCCTGAAGCTTCCCAGAATGGCCGGCGAGCCAACAAAATGAAGCCCAAGCGCAAGAGGAATAATGGCGACGCTCTTGATTGCGCTTCAACAATGGATTGCGTCTCGCTCGCTTCTAATTGA 2796 0.4903 MSRTVGTSMQELEYESLATRVHDLLSSDENKPDFRELDLGSAISTMKTPAAVNAAAGASNTPSCSRNAIAKLRKRPDGEPKNHSGELTETNPKASDTHRFAFATRNSKPGHRRSVSAGAPLIYSGGSFISTGNNSCAKGPTSGTNLTGNICPTGKTLKPGLASRPSSNRTDVLGSGTVNYGRGNIMRGGAKLGNGGHVVVDDNVARNSQPGGVSGIVKRAMGSSDPKEVKEAGNELYRSGYFAEAVSLYDRAISLSPDNPAYRSNQAAALTALGRLAAAAKECKEAVKLDAGYARAHQRLASLYLRFGQVENAQSHLCVPGKQVDPSELRKLRLLEKHLNRCSEARRISDWKSALRESDAATAVGADFSPQLVACKAEAYLKLHLLEDAETTLSNIPKLECCCLTKFFGMVGDAYVPFVRAQVEMALGRFENAVAEAEKASLIDYSNVEVARVASAVKMVARARSRGNSLFGAGKFSEACSAYGEGLRYDSSNYVLYCNRAVCWSKLGLWERTIEDCNQALNTQPNCIKALFRRAISYAKLEKWAEAVKDYEDLKRELPRDSEVAESLRQAHLALKKSRGEVYSTKLGVEVEEVSTLDRFKAAIAFPGVSVIYFKEASNELCEEMSPFMNMLCVRYPSVQFTKVDVEECKSIAKAESIRTVPAFKIYANGEKVKEMIRPSHQLLENSVRNSSSAENHDDGVAITDANEQGELQKTTGEERQVVFGALPRFPSLSPNHKSKYEPSQSGFLPCIFFIHEFLIFFGIRFQSFFLCSNHWFILQIIHIHGFKKLHKHSKKALVDAADALDLMDLQRSTLRQSVSAFATLTLEDAIADLNELSWQECCVTSIYSLSSCTENFPPPDQSPEVPRHLQIIPRTKASEKTEDIDRLHGLLPEASQNGRRANKMKPKRKRNNGDALDCASTMDCVSLASN 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3167 931 Pfam Tetratricopeptide repeat 232 293 - -
Bisa02g3167 931 MobiDBLite consensus disorder prediction 894 915 - -
Bisa02g3167 931 Pfam Thioredoxin 609 679 IPR013766 -
Bisa02g3167 931 Gene3D Glutaredoxin 584 699 - -
Bisa02g3167 931 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 26 689 IPR044534 -
Bisa02g3167 931 SUPERFAMILY Thioredoxin-like 593 679 IPR036249 -
Bisa02g3167 931 SUPERFAMILY TPR-like 464 577 IPR011990 GO:0005515
Bisa02g3167 931 Gene3D Tetratricopeptide repeat domain 224 580 IPR011990 GO:0005515
Bisa02g3167 931 MobiDBLite consensus disorder prediction 72 99 - -
Bisa02g3167 931 FunFam TPR repeat-containing thioredoxin TTL4 585 692 - -
Bisa02g3167 931 SMART tpr_5 494 527 IPR019734 GO:0005515
Bisa02g3167 931 SMART tpr_5 414 447 IPR019734 GO:0005515
Bisa02g3167 931 SMART tpr_5 460 493 IPR019734 GO:0005515
Bisa02g3167 931 SMART tpr_5 260 293 IPR019734 GO:0005515
Bisa02g3167 931 SMART tpr_5 528 561 IPR019734 GO:0005515
Bisa02g3167 931 SMART tpr_5 226 259 IPR019734 GO:0005515
Bisa02g3167 931 SUPERFAMILY TPR-like 227 316 IPR011990 GO:0005515
Bisa02g3167 931 ProSiteProfiles TPR repeat profile. 226 259 IPR019734 GO:0005515
Bisa02g3167 931 CDD TRX_family 600 685 - -
Bisa02g3167 931 Coils Coil 420 440 - -
Bisa02g3167 931 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3167 Bisa-ChrBisa02 80164848 80176835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3167 450 556 U-box Gene Family AT3G07370 30.000 2.90e-06 48.1