Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3071 ATGGATCTTCTCTGTGACGCATACGGCAATGCCTCTGACGACGACGACGAACAACCCAAGCGTCAGAAGCTCGCACTCTCTTCCTTCAACTCTAACAAACCAAAACCCTATCTTCCTCTTCCTTCCAACCATTCCTTGCAACTCCAAACACAACCTCTGCTTCCTGGAGGATACATTTCCAAGCGACAAAGAGCGCTCTTTGGCGCTGCCCCCGCTACTCCTGACCCGCTTCCGCTTCCGCTTTCGGTTTCATCTGCCGTCACCCTATCCGGAAGTATCTTGGATACTGATCTACCTCATAACATTTTAGCATTGTTGAGAAATGAAGGAAAGAATAATCGAAATCTGAACCTGACGCCAGAAAGGCTATCTGTGGCTCTATGTGGCCATACAAAAGCTGTCAATGTTATACAATGGTCTCCCACTTATGCTCATCTCCTTGCATCTGCTGGGATGGACCATACGGTTTGCATTTGGAATGTATGGAGTAGAGATCAGAAGAAAGCTCGCGTGTTAAACTTCCACAATGCAGCTGTGAAAGATGTAAAATGGTCTCAGCAAGGACACACGCTACTTTCTTGTGGATATGATTGCACATCAAGGTTGGTTGATATAGAAAAGGGGTTTGAGACTATGGTTTTCAGTGAAGATCAAATTGTTGGAGTTATAAAGTTCCATCCAGACAATCCAAACCTCTTCCTTTCGGGTGGTTCAAAAGGCCATATTAGACTATGGGATATCAGGACTGGCAAAGTAGCCAATAGCTTTATTCGCAGTTTAGGTCCAATTCTTGATGTTGAGTTTACAATCAATGGGAAGCAATTCATATCTTCTAGCGATGTATCAGGGAGCAATGTCAGTGAGAATTCTATTATTGTTTGGGATGTGTCAAGACAGGTTCCGCTATCTAATCAGGTTTACGTTGAAGCTTATACCTGTCCCTGTGTGAGGTGCCACCCATTTGAGTCTACTTTCGTTGCCCAGTCAAATGGGAATTATATTGCAATCTTTACTACCTCTCCACCTTTCAGGCTCAACAAATATAAGAGGTATGAGAGCCACAGCGTCTCTGGGTTCCCAATTAAGTGCAATTTCAGTTTCGATGGGAAGAGGCTTGCCTCTGGTTCTTCAGATGGCTGTATTTGCCTTTATGATTATCAATCATCGAAGGCTGTTAAGAAAATCAAGGCCTATGACCAAGCATGCATAGATGTTGTTTTCCATCCCATTATACCTAATGCAATTGCTTCATGCTCCTGGGATGGAAGCATTTCGGTCTTTGAGTAG 1287 0.439 MDLLCDAYGNASDDDDEQPKRQKLALSSFNSNKPKPYLPLPSNHSLQLQTQPLLPGGYISKRQRALFGAAPATPDPLPLPLSVSSAVTLSGSILDTDLPHNILALLRNEGKNNRNLNLTPERLSVALCGHTKAVNVIQWSPTYAHLLASAGMDHTVCIWNVWSRDQKKARVLNFHNAAVKDVKWSQQGHTLLSCGYDCTSRLVDIEKGFETMVFSEDQIVGVIKFHPDNPNLFLSGGSKGHIRLWDIRTGKVANSFIRSLGPILDVEFTINGKQFISSSDVSGSNVSENSIIVWDVSRQVPLSNQVYVEAYTCPCVRCHPFESTFVAQSNGNYIAIFTTSPPFRLNKYKRYESHSVSGFPIKCNFSFDGKRLASGSSDGCICLYDYQSSKAVKKIKAYDQACIDVVFHPIIPNAIASCSWDGSISVFE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3071 428 ProSitePatterns Trp-Asp (WD) repeats signature. 147 161 IPR019775 -
Bisa02g3071 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 251 - -
Bisa02g3071 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 127 161 - -
Bisa02g3071 428 SUPERFAMILY WD40 repeat-like 118 427 IPR036322 GO:0005515
Bisa02g3071 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 255 IPR001680 GO:0005515
Bisa02g3071 428 Gene3D - 106 428 IPR015943 GO:0005515
Bisa02g3071 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 127 169 IPR001680 GO:0005515
Bisa02g3071 428 Pfam WD domain, G-beta repeat 169 202 IPR001680 GO:0005515
Bisa02g3071 428 Pfam WD domain, G-beta repeat 223 246 IPR001680 GO:0005515
Bisa02g3071 428 Pfam WD domain, G-beta repeat 351 385 IPR001680 GO:0005515
Bisa02g3071 428 Pfam WD domain, G-beta repeat 127 160 IPR001680 GO:0005515
Bisa02g3071 428 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 20 428 - -
Bisa02g3071 428 SMART WD40_4 388 428 IPR001680 GO:0005515
Bisa02g3071 428 SMART WD40_4 207 246 IPR001680 GO:0005515
Bisa02g3071 428 SMART WD40_4 249 295 IPR001680 GO:0005515
Bisa02g3071 428 SMART WD40_4 120 160 IPR001680 GO:0005515
Bisa02g3071 428 SMART WD40_4 165 204 IPR001680 GO:0005515
Bisa02g3071 428 SMART WD40_4 344 385 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g3071 127 384 U-box Gene Family AT1G04510 22.878 1.13e-06 48.9