Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2957 ATGGAGGGCTCGTCTGGGTCTGCTTGGCAGAACTCTGACAGTTTTAGGGCATTAAATACTTCTGCAGTTTCAGGCAGAAACCCAAGGCTTATTTGTACTGAAAGTAACCCCTATTCTGGTGAAGCATCGAGTAGTTCTTCTGGCTTTAAGAAGGAGGGAGATAGGGTTGTGTTGGCTCAAGGTGATCAGCCTAGAAATCCAGGTGGCTTCTTGGGGGTTCATGAGTATGAAGCAGCTGTGGGACCTTTTATTCGATCTATAGGATGGGGTGATATCAGCTTGAGGCAGTGGTTAGATAAACCTGAACGGTCGGTAGATGCAATCGAATGCTTGCACATATTTAGGCAAATAGTAGAAATTGTTAATATAGCACATTGTCAAGGAATTGTTGTTCATAATGTGAGGCCCTCCTGCTTTGTCATGTCATCTTTTAATCATGTCTCCTTCATTGAGTCAGCTTCTTGTTCAGATTCTGGCTCAGATTCTTTAGAACATGGATTAAACTGCCCAGCTACTCAGATTAAAACCCCAACATTGATCTGTTCCCGTGATATGCATCACCGGAGAAATTTAGGAAGTGTGGATTTTGAATGTGTTACGACTTCAACAACTGCTGTGTCGGAATCTACTTGTGTGCTGTCCAGTGCAGTGTATGCAGCGCGTGCATCTTTGATAGAAGATACTGAAGAACATAAGGCCAGAGACAGGAGGAAGGCTGAACAAGTAGGAGGAAAGAAGCAATCATTTCCAATGAAACAGACACTGCTATTGGAGACTAGTTGGTACACTAGTCCCGAAGAGGTGGCTGGTTCATCAAGTTCCTGTGCTTCAGACATTTACCGATTGGGTGTTCTCCTATTTGAGCTATTCTGTCCGCTCAGCTCAAGAGAAGCAAAGAGCAGAACCATGTCTAGCCTTAAACATAGAATTCTTCCTCCACAGTTACTTCTGAAGTGGCCTAAAGAAGCTTCGTTTTGCTTATGGTTACTGCACCCTGATCCTAGTAGTCGTCCAACACTGGGAGAGTTATTGCAGAGTGAGTTCCTCAATGAACAGAGAGATGATATGGAAGAACGTGAAGCAGCAATAGAACTTAGAGAAAGGATAGAGGAACAGGAGTTGTTGCTAGAATTCCTTTTGTTAACTCAACAAAGGAAAGAGGATGTTGCTGATAATTTGCAACATACTGTTTCTTTTCTGTGTTCAGATATTGAAGAAGCCACGAAGCAGAAAATAATAATTAAAGAACTTGTTGGCTCTGATATAGGGAGTGAAGATCATTCAGTGTCAAGTTTCCTATATACAAAAGTTGTTGACAGTGAGGATTCTGCTTGCCTGGGGATCAGAAAGCGCATCAGACCAGGAATGGATGTTCACAACATTGAGGAATGTGAGGATAACGTAGGTGATGATCAGAACAATCATGGAAGTGTTCTTTCAAAAAGTTCTCGGTTAATGAAGAACTTTAAGAAACTAGAATCAGCTTACTTTTTAACACGATGCAGACAGTCAGGGAAACCAATGGTCACTGACAATAGAGGTTCTATTGGTGTGACTGAAAGAAGTTGTGTCAATAACTTGGCATCAAAAGATCAGCGCAGGGCGGATAGAAGTGCCTGGGTAAATCCTTTCCTTAACAGTTTGTGCAAGTACCTATCTTTCAGTGAACTAAAGATTAAGGCTGACCTGAAGCGAGGGGATCTATTGCATTCTTCCAACCTAGTATGTATGCTCAGTTTTGATCGTGATGGGGAATTTTTTGCTACTGCTGGTGTAAATAAGAAAATTAAAGTTTTTGAATGTGACTCAATCATAAATGAGGATAGTGATATCTACTATCCAGTAGTGGAGATGGCTAGCAGATCAAAGTTGAGCAGTATATGTTGGAACACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTGACAAGAAGTCAAGTACTGTCTGGAATGAAGGAGCATGAGCGGCGGGTGTGGTCCATTGATTTCTCATCAGCAGACCCAACAATGTTGGCAAGTGGGAGTGATGATGGTTCTGTTAAGCTATGGAGTATCAATCAGGGAATTAGCATCGGTACAATCAAAACAGAGGCAAATGTGTGCAGTGTTCAGTTTCCCATGAATTCTGGTCGTTTCCTGGCATTTGGTTCAGCAGACCATCAAATATATTACTATGATCTCCGGAACCTAAAAATGCCTCTCTGTACATTAGTTGGACATAATAAGACCGTAAGCTACATCAAGTTTGTAGACACTGTGAACCTTGTCTCAGCATCCACTGACAACACTTTGAAGCTTTGGGATTTGTCTACATGCACATCTCAAGTTATAGACACACCACTTCGAACATTTACAGGTCACATGAATGTGAAGAACTTTGTTGGGTTGTCAGTATCTGATGGATACATTGCTACTGGTTCAGAGACAAATGAGGTTTTCATATACCACAAGGATTTTCCCATGCCAGCTTTGTCATTCAAGTTTCACAACACAGACCCACTCTCTGGGCATGAAGTGGATGATGCTGCGCAGTTCATCTCTTCTGTTTGTTGGCGTGGCCAGTCAAGCACCTTAGTTGCTGCGAATTCCACTGGAAATGTCAAAATTCTGGAGATGGTTTAA 2649 0.4186 MEGSSGSAWQNSDSFRALNTSAVSGRNPRLICTESNPYSGEASSSSSGFKKEGDRVVLAQGDQPRNPGGFLGVHEYEAAVGPFIRSIGWGDISLRQWLDKPERSVDAIECLHIFRQIVEIVNIAHCQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDSLEHGLNCPATQIKTPTLICSRDMHHRRNLGSVDFECVTTSTTAVSESTCVLSSAVYAARASLIEDTEEHKARDRRKAEQVGGKKQSFPMKQTLLLETSWYTSPEEVAGSSSSCASDIYRLGVLLFELFCPLSSREAKSRTMSSLKHRILPPQLLLKWPKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRERIEEQELLLEFLLLTQQRKEDVADNLQHTVSFLCSDIEEATKQKIIIKELVGSDIGSEDHSVSSFLYTKVVDSEDSACLGIRKRIRPGMDVHNIEECEDNVGDDQNNHGSVLSKSSRLMKNFKKLESAYFLTRCRQSGKPMVTDNRGSIGVTERSCVNNLASKDQRRADRSAWVNPFLNSLCKYLSFSELKIKADLKRGDLLHSSNLVCMLSFDRDGEFFATAGVNKKIKVFECDSIINEDSDIYYPVVEMASRSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQVLSGMKEHERRVWSIDFSSADPTMLASGSDDGSVKLWSINQGISIGTIKTEANVCSVQFPMNSGRFLAFGSADHQIYYYDLRNLKMPLCTLVGHNKTVSYIKFVDTVNLVSASTDNTLKLWDLSTCTSQVIDTPLRTFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKDFPMPALSFKFHNTDPLSGHEVDDAAQFISSVCWRGQSSTLVAANSTGNVKILEMV 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2957 882 MobiDBLite consensus disorder prediction 28 51 - -
Bisa02g2957 882 SUPERFAMILY WD40 repeat-like 570 880 IPR036322 GO:0005515
Bisa02g2957 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 660 702 IPR001680 GO:0005515
Bisa02g2957 882 SUPERFAMILY Protein kinase-like (PK-like) 92 358 IPR011009 -
Bisa02g2957 882 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 543 882 - -
Bisa02g2957 882 Gene3D - 545 882 IPR015943 GO:0005515
Bisa02g2957 882 ProSiteProfiles Protein kinase domain profile. 1 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa02g2957 882 PANTHER PROTEIN SPA1-RELATED 2 52 882 IPR044630 GO:0009640
Bisa02g2957 882 Gene3D Transferase(Phosphotransferase) domain 1 91 361 - -
Bisa02g2957 882 SMART WD40_4 696 735 IPR001680 GO:0005515
Bisa02g2957 882 SMART WD40_4 653 693 IPR001680 GO:0005515
Bisa02g2957 882 SMART WD40_4 786 825 IPR001680 GO:0005515
Bisa02g2957 882 SMART WD40_4 611 650 IPR001680 GO:0005515
Bisa02g2957 882 SMART WD40_4 739 777 IPR001680 GO:0005515
Bisa02g2957 882 SMART WD40_4 836 880 IPR001680 GO:0005515
Bisa02g2957 882 SMART WD40_4 565 600 IPR001680 GO:0005515
Bisa02g2957 882 SMART serkin_6 2 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa02g2957 882 Pfam WD domain, G-beta repeat 661 693 IPR001680 GO:0005515
Bisa02g2957 882 Pfam WD domain, G-beta repeat 742 777 IPR001680 GO:0005515
Bisa02g2957 882 ProSiteProfiles Trp-Asp (WD) repeats profile. 746 780 IPR001680 GO:0005515
Bisa02g2957 882 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 746 780 - -
Bisa02g2957 882 ProSitePatterns Trp-Asp (WD) repeats signature. 764 778 IPR019775 -
Bisa02g2957 882 MobiDBLite consensus disorder prediction 28 50 - -
Bisa02g2957 882 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 660 697 - -
Bisa02g2957 882 PRINTS G protein beta WD-40 repeat signature 764 778 IPR020472 -
Bisa02g2957 882 PRINTS G protein beta WD-40 repeat signature 637 651 IPR020472 -
Bisa02g2957 882 PRINTS G protein beta WD-40 repeat signature 680 694 IPR020472 -
Bisa02g2957 882 Coils Coil 346 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2957 Bisa-ChrBisa02 74974319 74992320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2957 679 824 Miscellaneous Gene Families AT5G08390 27.333 1.42e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Bisa02g2957 WD40 0.022 CL0186