Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2917 ATGGATCAGATGACTGATTTGGATATGGATCAACAAAGGCATGGAAATTTTAATTCTGAACCCTGTATGCTTTTGAGGGGTCCCAACATTCTGCAGCCGAATATCCGCACAGTGGCAACAGCTTCAGGGAGCACAAGTAATCTTGATTCCCACTATTTACCTGATACTTATGACAACTCTGTAATGTATGGAGTGACACAATACAATGGCATTCCGCATCAACGCAATCTCGATATGGGTGTTGCAGCGGCAACCAGCGTACATTATTCTGGCATGAATCCTTCTAGTAATGTTGTATTGCCTCTTCCTATCAATCACAGAGCCTCTGATCAGTTGCCATCTTCAAGCACATTTGCTGTCTCTGGAGTTTCTTCAGATAATTTTGGAAGGTACGGCAGCATTGTGGATGATGTCAGAGGTCCATTCAAAAGAAAAAGTGCTGAAACCATTAGAGGAAATTTCCAATATTTTGGTCCCTCTGCTAGTTCTTCAGCTGCTCCCCCAAATGCAAGGCACTCTGATGGGGTTGCAATGATGGATACTGCTTCCTTGTCCCTGCCTCAATTCCAAGGAAATTGCATCCCTTCACTCATGGAAGTAGGACCTCATGGTAGCTTATGGAGCAGGTCAGGTGAGTCTGTTATGGCACATGAACATAACCATTTGATTCGAGGAAATTATTTAGGGCAACACTTTCAGCCAGTTCCTCCTCCCTGGTTGGACCAACAGTTGAATAGTAATAATGGTGATGGACATACTACAGCCTGGAATCAGTCTCTTCACATGCCTTATATGCGAGCACCCAATGTCAGTGGAAGTTCTTTAGAGAATGCAAATATGGGCTTGCAGAGATATCATGAAACAACTAGCAATGTGGGTGGCCTCAGGTTTCTTCATCCTCCTGTCAATCACCAGCATCATAATTATCATCATCATCCATCACTGCCTATGCAAGGGGTCAGAGGCCATGGTATCAGCTTTCAACCTCCAGTAACTGCAACTTCTTATAGAGTTCCAGCAAATCCTTCACGCAGTGCTGTGATACCAGCACAGAATGGTTTTGAGATGGGTCCTAGGCATATTGGCTTTGCCCCAATGGCAGGCCTACGGATATACCGTCCTCAGCGGGGATTCACACCCAGTACAACTATTGGACATCGGAATCTTCCTCCCACGAGTTTTCTCCAAGTTGATGATGTTGCTTTACTTGATGAGGTGGGATTGGTCGACCATCACAGAGATATGCGTCTGGACATAGAGGATATGTCTTATGAGGAGCTTCTTGCATTGGGCGAGCGGATTGGCAATGTAAGCACTGGTTTATCAGAGGAATCTATTTCAACTCTGATGAACACTAAAATTTATTTAACATCTGCCACTATTAACCCGGAGGAGGAAGCTTCTGAGGACCAGGAAACCTATTCTTGCATAATATGCCAGGATAAATATAAGAACCGGGAGAAGATCGGAATCCTTCATTGTGGACATGAGTATCATGCAGAGTGCTTGAAGAAGTGGTTGCTTGTGAAAAATGTCTGTCCGATATGCAAATCGGAAGCATTGACTCCGGGAAAGAAGGACAATGGAGCGTAG 1593 0.4451 MDQMTDLDMDQQRHGNFNSEPCMLLRGPNILQPNIRTVATASGSTSNLDSHYLPDTYDNSVMYGVTQYNGIPHQRNLDMGVAAATSVHYSGMNPSSNVVLPLPINHRASDQLPSSSTFAVSGVSSDNFGRYGSIVDDVRGPFKRKSAETIRGNFQYFGPSASSSAAPPNARHSDGVAMMDTASLSLPQFQGNCIPSLMEVGPHGSLWSRSGESVMAHEHNHLIRGNYLGQHFQPVPPPWLDQQLNSNNGDGHTTAWNQSLHMPYMRAPNVSGSSLENANMGLQRYHETTSNVGGLRFLHPPVNHQHHNYHHHPSLPMQGVRGHGISFQPPVTATSYRVPANPSRSAVIPAQNGFEMGPRHIGFAPMAGLRIYRPQRGFTPSTTIGHRNLPPTSFLQVDDVALLDEVGLVDHHRDMRLDIEDMSYEELLALGERIGNVSTGLSEESISTLMNTKIYLTSATINPEEEASEDQETYSCIICQDKYKNREKIGILHCGHEYHAECLKKWLLVKNVCPICKSEALTPGKKDNGA 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2917 530 Pfam Ring finger domain 475 517 IPR001841 -
Bisa02g2917 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 521 IPR013083 -
Bisa02g2917 530 SUPERFAMILY RING/U-box 475 521 - -
Bisa02g2917 530 CDD RING-H2_RNF24-like 476 520 - -
Bisa02g2917 530 ProSiteProfiles Zinc finger RING-type profile. 476 517 IPR001841 -
Bisa02g2917 530 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 111 521 IPR045191 GO:0061630
Bisa02g2917 530 SMART ring_2 476 516 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2917 Bisa-ChrBisa02 73956685 73958931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2917 395 521 C3H Transcription Factor Family AT2G15530 48.120 8.20e-35 137