Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2879 ATGGATCCCACTAAGAAGCGAAAGCTCGAGGAAAACGGCGTCGCCGCTCCCGATTCCGACTTAAATCTCACTCCTTCCGACGCACGCAAAATCATCGAGCGTTTCAGCCCCGAGCAACTCATCGATATTCTCCAGGACGCCGTCGCCCGCCACGGTGACGTTCTCGATGCCGTGCGGTCTATTGCGGACACTGATGTCACCCAGCGTAAGCTGTTTATCCGTGGCCTTGGGTGGGAAACCACGACTGACGGCCTTCGCTCCCTCTTCTCCACCTTCGGTGAGCTTGAAGAAGCAATTGTGATTCTTGATAAGGCCACCGGGAAGTCTAAGGGTTATGGGTTTGTCACCTTCAAGCACGTCGATGGTGCTTTGCTTGCACTGAAGGAGCCCAGCAAGAGGATAGATGGTCGCGTCACTGTCACGCAGCTTGCGGCGGCCGGGAATACGGGATCAAATACGAATGCTGCAGACATTGCTCTGCGGAAGATATACGTTGCGAATGTGCCGCCTGATCTGCCTAGCGATAAATTGTTGGCTCACTTTTCACTTTATGGGGAAATTGAGGAAGGGCCTTTAGGGTTTGATAAGCAGACTGGTAAGTCGAAGGGGTTTGCTCTTTTTGTGTACAAGACCCCGGAGGGGGCGCAAGCAGCACTTGTGGATCCGGTGAAGATGGTCGAGGGAAGGCAGCTGAATTGCAAGCTGGCGATAACTGATGGGAAGCAGGGGAAACGGGGTGCGGGGCCGATGGGACATGATGGGATGCAGGGTCCCGGGAATGCTCATGGGGACGGAATGGGTTTGGCTCCACCGTCTTCCATGCCAGGGTCGCTTTCAGGTCAGTATGGAGGGCCCGTGGGCCTAGGATCATATGGGGGCTTTGGGAGTGGGCTTCAGGGTCAGCCTCCGCTGGGGGGTCACCCTCTGAATTCGTCTGTGGGTGGCACGGGGTTGTCTTCAGTGGGTAATCAGGCGCCTTCCTCTCTAGGAGGTACTGGAGGGTATAGTTCTGGGCTGGGCGGTCCTTATGGCGGCTATAGTGGACCTGGATCAACTGGTTATGGTGCACTGGGGGGCGGTGGTGGTGCGGGTTTGGGAGGAGGTAGTGGTGGACTGGGTGGTTCTGGTGGTGGGTTTGGTGGAGCTGCTTCTTTGTATAGATTGCCGACTTCTGGTTCCTCCCAGCGCAATGTATCCAAACGTTCCTCCTTACTACTGAGGTGTATCATGGCTTATTGGCGTAGATGCTTCCTTCAGGTGTATCATGGCTTATTGGCGTAG 1281 0.5558 MDPTKKRKLEENGVAAPDSDLNLTPSDARKIIERFSPEQLIDILQDAVARHGDVLDAVRSIADTDVTQRKLFIRGLGWETTTDGLRSLFSTFGELEEAIVILDKATGKSKGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNTGSNTNAADIALRKIYVANVPPDLPSDKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALVDPVKMVEGRQLNCKLAITDGKQGKRGAGPMGHDGMQGPGNAHGDGMGLAPPSSMPGSLSGQYGGPVGLGSYGGFGSGLQGQPPLGGHPLNSSVGGTGLSSVGNQAPSSLGGTGGYSSGLGGPYGGYSGPGSTGYGALGGGGGAGLGGGSGGLGGSGGGFGGAASLYRLPTSGSSQRNVSKRSSLLLRCIMAYWRRCFLQVYHGLLA 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2879 426 SMART rrm1_1 70 142 IPR000504 GO:0003723
Bisa02g2879 426 SMART rrm1_1 162 234 IPR000504 GO:0003723
Bisa02g2879 426 SUPERFAMILY RNA-binding domain, RBD 62 144 IPR035979 GO:0003676
Bisa02g2879 426 MobiDBLite consensus disorder prediction 1 20 - -
Bisa02g2879 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Bisa02g2879 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Bisa02g2879 426 FunFam UBP1-associated protein 2C isoform A 52 155 - -
Bisa02g2879 426 SUPERFAMILY RNA-binding domain, RBD 155 265 IPR035979 GO:0003676
Bisa02g2879 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Bisa02g2879 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 220 IPR000504 GO:0003723
Bisa02g2879 426 MobiDBLite consensus disorder prediction 293 325 - -
Bisa02g2879 426 MobiDBLite consensus disorder prediction 240 264 - -
Bisa02g2879 426 PANTHER GEO13361P1-RELATED 52 343 - -
Bisa02g2879 426 Gene3D - 153 269 IPR012677 -
Bisa02g2879 426 Gene3D - 48 152 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2879 Bisa-ChrBisa02 73086875 73089674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2879 157 276 C2H2 Transcription Factor Family AT2G19380 35.537 8.99e-11 62.0