Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2872 ATGTCGCATTCTGGGAAGCCTATTTCCGATCTAGGGTTAGATGCTCTCAACGATCGATTCCGCGACTCGTTAAGCTGCGAGGCTAACAAGCCTGATTTTCGCGAACTTGATTTGGGCTCGCCGGTTTCGCCATTGCGGATTCGTCAGAGTGTACCTACTGCCAGTGGACTTACCACTACCAGCAGTAGTTCCAGTTCATCCGGATCGGTCTCTGGACGGAACGGGTATAATCATATTGCAAAACGATCCCATTCGGATCCGAACAACCACTCCGGCGAGCTTTCTGGCTCCGGCGAGAACAGTCCCACCGCTGTTGAGAGCCTACGATCTGTGGGGAATGTCAGGAATTCCAGATGGCCCCAAGCAAAATCAGATTCCGCCACCTCTCAGCCATTGATTTACTCCGGTCAAAGCTCCTCCGCTAATTCACCGCCGCCGAGTGCTCTTCCTACAGGCAATATCTGTCCGTCCAGTAAGATTCTAAAGGCCGCTGCTGCGGCCAATCGGACCTCGAGGACGGACGTTTTGGGCTCCGGTACGGGAAATTACGGCCATGGAAGCATAATGCGGGGCGGTGCAGCTTCGAAAGGCTGCGCTGGAGAGGCCATCGGTGCGGCCAATGCAAGGGCAAGCAGTGCTGGCGCTGTCGGCGCCACCGACTTGTTTAAGCGACCGGTGTCGAGTGTGGATCCAGAAGAGGTGAAGAGAGCAGCGAACGAGCAGTACAAGAGGGGTCACTTCGCAGAAGCACTGAGTCTGTACGATCGAGCAATTGCATTATCCCCTGCTAACGCTGCCTACCGGAGCAACCGTGCAGCCGCATTGACGGGTTTGGGACGGTTGGCGGAGGCGGTGAGGGAATGTGAGGAGGCTGTGAGGTTGGATCCTAATTATGGAAGGGCACATCAGCGTCTGGCTTCTCTTTTTCTACGGTTAGGACAAGTTGAGAATGCCAGGAAGCACCTTCTCAGTCCTGGGCTGCCGCCAGATCCTCTTGAGTTGCAGAAATTGCAATTAGTGGAGAAGCATATCAGCAAATGTACAGATGTTCGGAGGATAGGTGATTGGAAAAGTGTACTCAGGGAAGTAGATGCTGCTGTTGCTGCTGGAGCAGATTCTTCTCCACAGCTCTTTATGTGTAGAGCAGAAGCCCTCTTGAAGCTCCACCAAATTGATGATGCCGAATCAAGTCTATTAAAAAATCCCAAATTGGAATCACATACTAACTCCTCTTCACAGGCAAGATTTTTTGGCATCCTTTCTGAAGCTTATTCCTTCTTCGTCAGAGCTCAGATTGAGATGGCTTTGGGAAGGTTCGAGAATGCAGTTACAGCTGCTGAAAAAGCTAGTCAGATTGATCCCCGAAACGATGAAGTTGCTATCTTGCTAAAAAATGTAAGGATGGTAGCGAGATCTCGAGTGCGTGGCAATGATCTTTTCAAATCTGAAAGACTTACTGAAGCTTGCTCGGCATATGGAGATGGTTTGAGGTTGGATCCTTCTAATTCTGTTCTCTACTGCAATAGAGCAGCTTGTTGGTTTAAGCTTGGGCAATGGGAACGATCAATTGAAGATTGCAATCAAGCTTTACAGATCCAACCAAATTACACAAAAGCCCTTCTACGAAGGGCTGCATCAAACAGCAAGCTAGAAAGGTGGGCAGAAGCAGTCAAAGATTATGAGGTCTTACGGAGAGAGCTTCCAGATGACAATGAAGTAGCTGAAGCTCTGTTTCACGCAATAGTAGCATTGAAAAAATCTCGTGGAGAAGAAGTGCATAATTTGAAATTTGGTGGTGAAGTGGAAGAAGTATCAAGTCTTGAGCAATTTAGAGCAGCAATATCATTGCCTGGTGTTTCTGTTGTCCATTTTGAAATTGCATCTTACCCGGAATGCAAGCAAATTTCACCATTTGTGGGTATGCTATGTGGTCGCTATCCCTCTATTAACTTCCTCAAGGTTGATATTCAAGAATGCCCAACAGTTGCAACTGCTGAGAATGTTAAAATTGTACCAACATTCAAGATCTACAAGAATGGCTGTCGGGTGAAGGAAATTGTATGCCCTAATCGTGACATGTTGGAACACTCTGTGAGGCATTACAGCTTTTAG 2112 0.4825 MSHSGKPISDLGLDALNDRFRDSLSCEANKPDFRELDLGSPVSPLRIRQSVPTASGLTTTSSSSSSSGSVSGRNGYNHIAKRSHSDPNNHSGELSGSGENSPTAVESLRSVGNVRNSRWPQAKSDSATSQPLIYSGQSSSANSPPPSALPTGNICPSSKILKAAAAANRTSRTDVLGSGTGNYGHGSIMRGGAASKGCAGEAIGAANARASSAGAVGATDLFKRPVSSVDPEEVKRAANEQYKRGHFAEALSLYDRAIALSPANAAYRSNRAAALTGLGRLAEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVENARKHLLSPGLPPDPLELQKLQLVEKHISKCTDVRRIGDWKSVLREVDAAVAAGADSSPQLFMCRAEALLKLHQIDDAESSLLKNPKLESHTNSSSQARFFGILSEAYSFFVRAQIEMALGRFENAVTAAEKASQIDPRNDEVAILLKNVRMVARSRVRGNDLFKSERLTEACSAYGDGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALQIQPNYTKALLRRAASNSKLERWAEAVKDYEVLRRELPDDNEVAEALFHAIVALKKSRGEEVHNLKFGGEVEEVSSLEQFRAAISLPGVSVVHFEIASYPECKQISPFVGMLCGRYPSINFLKVDIQECPTVATAENVKIVPTFKIYKNGCRVKEIVCPNRDMLEHSVRHYSF 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2872 703 Pfam Tetratricopeptide repeat 505 536 IPR001440 GO:0005515
Bisa02g2872 703 Pfam Thioredoxin 608 695 IPR013766 -
Bisa02g2872 703 ProSiteProfiles TPR repeat profile. 423 456 IPR019734 GO:0005515
Bisa02g2872 703 SMART tpr_5 469 502 IPR019734 GO:0005515
Bisa02g2872 703 SMART tpr_5 537 570 IPR019734 GO:0005515
Bisa02g2872 703 SMART tpr_5 423 456 IPR019734 GO:0005515
Bisa02g2872 703 SMART tpr_5 231 264 IPR019734 GO:0005515
Bisa02g2872 703 SMART tpr_5 375 408 IPR019734 GO:0005515
Bisa02g2872 703 SMART tpr_5 503 536 IPR019734 GO:0005515
Bisa02g2872 703 SMART tpr_5 265 298 IPR019734 GO:0005515
Bisa02g2872 703 Pfam Tetratricopeptide repeat 425 456 IPR019734 GO:0005515
Bisa02g2872 703 SUPERFAMILY TPR-like 231 458 IPR011990 GO:0005515
Bisa02g2872 703 SUPERFAMILY Thioredoxin-like 506 701 IPR036249 -
Bisa02g2872 703 Gene3D Glutaredoxin 593 702 - -
Bisa02g2872 703 MobiDBLite consensus disorder prediction 89 154 - -
Bisa02g2872 703 ProSiteProfiles TPR repeat profile. 503 536 IPR019734 GO:0005515
Bisa02g2872 703 ProSiteProfiles TPR repeat profile. 231 264 IPR019734 GO:0005515
Bisa02g2872 703 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 20 700 IPR044534 -
Bisa02g2872 703 FunFam TPR repeat-containing thioredoxin TTL4 595 702 - -
Bisa02g2872 703 Gene3D Tetratricopeptide repeat domain 229 589 IPR011990 GO:0005515
Bisa02g2872 703 CDD TRX_family 608 690 - -
Bisa02g2872 703 MobiDBLite consensus disorder prediction 46 78 - -
Bisa02g2872 703 MobiDBLite consensus disorder prediction 26 154 - -
Bisa02g2872 703 Pfam Tetratricopeptide repeat 237 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2872 Bisa-ChrBisa02 72955574 72958980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2872 468 539 U-box Gene Family AT3G07370 37.500 1.93e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0501 12 7553517 7556679 Bisa02g2872 02 72955574 72958980 CCT
Bisa02g2872 02 72955574 72958980 Bisa12g0758 12 12045533 12048544 CCT
Bisa02g2872 02 72955574 72958980 Bisa02g2872 02 72955574 72958980 ECH