Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2850 ATGTCCAAGTCTCTGAGAAACGTTTTTCGTTCTCGGAAATTCTCCAGATCCTTCAAGGAAGTTAGGGCCATCGAGGAGGATGAGCGGAAGGAGCGGCTTGGCGGTGACTTGGACGACGGCTCCGATTCGGAGTCCCCGCCCTACGGCCATGCATGGTCCAACATGTTGCCGGAGCTTCTCGGGGAGATCATACGCCGCGTTGAGGCCACCGAGGATCAGTGGCCCCGCCGCCGAAACGTCGTTGCTTGCGCGTGCGTGTGCAGGAGGTGGAGGGACATCACGCAGGAGATCGTGCGCTCCCCTTCACGCAACAGCTGCAAGATCACTTTTCCTTCTTGCCTCAAGCAGCCAGGACCACGTGACTCACCCCACCAATGTATTATAAAGCGGGACAAGAAGACTTCAACATTTTACCTATATCTTGCACTTCCACCACCATCATTCACAGATAAAGGTAAGTTTCTCTTAGCAGCTAGGAGATATAGACGAGGTGCCCATATCGAATATTTAATATCACTTGATGCTGATGACTTTTATCAAGGAAGCAATGCTTACGTTGGAAAGTTAAGCTCAGATTTTCTTGGCACCAACTTCACAATCTATGATAGCCAACCACCCCATAATGGTGCAAAGCCATCAAATGGCAAGGCGAGTCGTCGTTTTACCAGCAAGCAGATAAGCCCTCAAGTTCCTGCAGGTAACTTTGAGGCGGGGCAGGTGTCATACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGGATGGTTTGCTTGATGAAGTGCCCCTACTCATCATCAGGAGAAAGTTCAGATAGCAAATCTCTGAGTGGTCATAAGATGAACAATACAGAACATGCTGCCTCTGGATGCTCGATCTTGAAAAACAAAGCTCCAAGGTGGCATGAACATTTGCAATGTTGGTGCTTAAATTTCCATGGGCGTGTAACCGTAGCATCAGTGAAGAACTTTCAGCTCATTGCTACTGTGGACCAAAGCCAACCAGAAGGGAAGGGAGATGCGGAAACAGTTCTTCTTCAATTTGGGAAAGTGGGGGATGATACTTTCACCATGGATTACAGGAAGCCTTTATCTGCCTTTCAGGCCTTTGCCATTAGCCTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1152 0.4861 MSKSLRNVFRSRKFSRSFKEVRAIEEDERKERLGGDLDDGSDSESPPYGHAWSNMLPELLGEIIRRVEATEDQWPRRRNVVACACVCRRWRDITQEIVRSPSRNSCKITFPSCLKQPGPRDSPHQCIIKRDKKTSTFYLYLALPPPSFTDKGKFLLAARRYRRGAHIEYLISLDADDFYQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSNGKASRRFTSKQISPQVPAGNFEAGQVSYKFNLLKSRGPRRMVCLMKCPYSSSGESSDSKSLSGHKMNNTEHAASGCSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLIATVDQSQPEGKGDAETVLLQFGKVGDDTFTMDYRKPLSAFQAFAISLTSFGTKLACE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2850 383 CDD F-box_AtTLP-like 52 96 - -
Bisa02g2850 383 SUPERFAMILY Tubby C-terminal domain-like 106 383 IPR025659 -
Bisa02g2850 383 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bisa02g2850 383 PRINTS Tubby superfamily signature 293 310 IPR000007 -
Bisa02g2850 383 PRINTS Tubby superfamily signature 311 327 IPR000007 -
Bisa02g2850 383 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bisa02g2850 383 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bisa02g2850 383 PRINTS Tubby superfamily signature 340 359 IPR000007 -
Bisa02g2850 383 PRINTS Tubby superfamily signature 361 383 IPR000007 -
Bisa02g2850 383 ProSitePatterns Tub family signature 1. 311 324 IPR018066 -
Bisa02g2850 383 MobiDBLite consensus disorder prediction 25 39 - -
Bisa02g2850 383 Gene3D Tubby Protein; Chain A 109 383 IPR025659 -
Bisa02g2850 383 MobiDBLite consensus disorder prediction 25 48 - -
Bisa02g2850 383 Pfam F-box domain 52 98 IPR001810 GO:0005515
Bisa02g2850 383 Pfam Tub family 114 378 IPR000007 -
Bisa02g2850 383 PANTHER TUBBY-RELATED 50 381 - -
Bisa02g2850 383 ProSitePatterns Tub family signature 2. 368 383 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2850 Bisa-ChrBisa02 72097220 72101128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2850 35 383 TUB Transcription Factor Family AT1G53320 75.900 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bisa02g2850 Tub 5.2e-100 CL0395