Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2800 ATGGATGCCAAATTTCTCGGCGGCTTACCTCCTCTCAAGAGATTGAGACTCATCCAACAGCAGCAAGAGCTACAGAATCAGCAGCAACGTCAAAACGACGAAACGCGCGAAGAAGGCACTGTCGTTTCCTGCTCTACCTTACCGGCGAAGAAGCGTAAAGAGTCGCGAGACTCCACGAATCTTCCTGACCCAGCAGTTTCGAGTTCGTCCAATGCCTATTCGTTGCCAGCTAAGAAAAGGGTATGGGCTCTTCAACCTGATTTTGCTTCCAGTATCGCTGTTTCTCCCATTGACCTCAATGTTGAATACAAACCCTCTGTTGAGGAAGAAGTAAAAACAGAGGACGATGAAAGCAATGATACTGGGATCCCATTAGAATCAAATTCTCAGAATGAAAGTGAAGAAGCTGAAAATGATATTGGTAATGATGAGGAAGACGATGGGATTGTATGTGCTGTATGTCAAAGCACAGACGGGGATCCATCAGATCCTATCGTTTTCTGTGACGGGTGTGATCTAATGGTTCACGCCTCATGCTATGGCAGTCCCCTTGCAAAGAGCATACCAGAAGGCGACTGGTTCTGCGAAAAATGCAAGGTTTCATCGTCTTCTCAAACTGAGAATGACGACAAAAAGATCATTTCTTGTTGCCTCTGTCCTGTAACTGAAGGAGCTATGAAGCCCACGACGGACGAACGGTGGGCACACATTGTGTGCGCGCTTTTGGTCCCGGATGTGTTTTTTGCAGAACCGGAGGGAAGAGAAGGAATCGATTGCTCTAAGGTTCCGAAGAAGAGATGGTCAGAGAAGTGTTATATCTGCAAATCTGCAAATGGGTGTGCTATTCAATGTTCAGAGCAGAAGTGTGGGTTGGCGTTTCATGTTACTTGTGGGCTGAAAGAGGATCTTAGCATTGAGTACAGAGAAGGGAAGAAGAGTGCTACCATTGTTGCTGGTTTCTGCAAAACCCACACTGAGCTATGGAAAAAGCAACAGCAATCAGGGAAATATAAGATTGTTGCTAGAGAGGACATGAAGTAG 1041 0.4601 MDAKFLGGLPPLKRLRLIQQQQELQNQQQRQNDETREEGTVVSCSTLPAKKRKESRDSTNLPDPAVSSSSNAYSLPAKKRVWALQPDFASSIAVSPIDLNVEYKPSVEEEVKTEDDESNDTGIPLESNSQNESEEAENDIGNDEEDDGIVCAVCQSTDGDPSDPIVFCDGCDLMVHASCYGSPLAKSIPEGDWFCEKCKVSSSSQTENDDKKIISCCLCPVTEGAMKPTTDERWAHIVCALLVPDVFFAEPEGREGIDCSKVPKKRWSEKCYICKSANGCAIQCSEQKCGLAFHVTCGLKEDLSIEYREGKKSATIVAGFCKTHTELWKKQQQSGKYKIVAREDMK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2800 346 SMART PHD_3 270 325 IPR001965 -
Bisa02g2800 346 SMART PHD_3 150 199 IPR001965 -
Bisa02g2800 346 MobiDBLite consensus disorder prediction 21 71 - -
Bisa02g2800 346 Pfam PHD-finger 150 200 IPR019787 -
Bisa02g2800 346 Pfam PHD-zinc-finger like domain 215 324 - -
Bisa02g2800 346 ProSiteProfiles Extended PHD (ePHD) domain profile. 213 325 IPR034732 -
Bisa02g2800 346 PANTHER PHD FINGER PROTEINS 46 325 - -
Bisa02g2800 346 SUPERFAMILY FYVE/PHD zinc finger 137 201 IPR011011 -
Bisa02g2800 346 MobiDBLite consensus disorder prediction 106 144 - -
Bisa02g2800 346 CDD PHD_BRPF_JADE_like 150 198 - -
Bisa02g2800 346 ProSiteProfiles Zinc finger PHD-type profile. 148 201 IPR019787 -
Bisa02g2800 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 210 IPR013083 -
Bisa02g2800 346 Coils Coil 12 38 - -
Bisa02g2800 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 327 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2800 Bisa-ChrBisa02 70656300 70663246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2800 21 346 C2H2 Transcription Factor Family AT3G14740 54.545 1.53e-123 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa02g2800 zf-HC5HC2H_2 1e-29 CL0390