Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2767 ATGCTGACGAGAAAATTTCACTTGATATGCTCCTCAGAACCCCAAAAAAATAATGCCTTTTGTTTTCAAGACTGTGTCTTACTTTTGCAGCATCTGAGGGATCACGAGGACGTAAATTATGGCCGATCGCTTCATTCTTTCTTCATTAAAAGCGGCCTTGACAGAGACGTTTTCGTACAGAACAATATGATAAGGTTTTATGGGGATATTTGTGGTGACTTGAAGAATGCTCATCTTGTGTTTGATGAAATTCCTGAACCGAGTTTAATTTCTTGGACTAGTTTGGTCTCTTCTTATATCCACGACGGGCAGTATGTAATGGGTCTGTACTTGTTTTCTCTCTTATGTCAGTCTGGGTTACGGCCAAATGAGTTTGGTTTCTCTGTGGCACTCAAAGCATGCAGAGTGATGCAAGATCCTATCATGGGGAGACTCATTCATGGTTCAATAATTAAAAGTGGGTTTGAATCACACAGCTTTTGCAGTGCTTCGGTTGTTCACCTGTATGCTGAATGTGGAGATATGGAAAATTCAAGTAAGCTCTTTGACGAGATTTCTTTGGGAGAAAGGTCTGAGGCCTTATGGAATACTTTGCTGAATGCTTATGTGCAGATGTCTGATGCAGAGGGAGCTCTTTACTTGTTTCATGAGATGGGGCACTCTGCGATATCGCCAAATTGTTTGACTTACACAATCCTTGTTAAACTCGGTGCTAATGTGTTGGATTTTGAACTTGCAAGGTGTATTCATTGCCAAACTTTGAAGCTTGGGATTGATAATGATGTTATGGTGGGTGGAGCTCTTGTTGACACCTACTCAAAACTGAGATTGTTAGATGATGCTTGCGAAATGTTTCAAGTTCTCAAGGAGAAGGACAATGTAGCATTGTGCTCATTATTGGCTGGGTTCAATCAGAGTGGAAAAGCTGAAGAAGGCCTTACATTTTTTATTAATTTTCTTTATGAAGGTAATAAACCTGACCCATTTACTTGTGCAAGCGTTGTTAGTTTGTGTTCAAATTTGAAGACAGAGCTTGCTGGTACCCAAGTTCACTGTAGTTTCATCAAATTGGGCCTTATGATGGACTCATATCTTGGTAGTGCCTTTATCAATATGTATGGAACCTTTGGAATGATTTCTAATGCTTATAAATGTTTCCTTGAGGTTTGCTATAAAAACGAAATATGCATAAGTGCCATGATTAATGCTTTAGTTCTGAATTCAAATGATGAAAAAGCTTTAGATCTGTTTTGTTGGATGAGGGAAGTTGGTGTTGTACCAAGCAAATCTACGATCAGCTTTGTTCTACGAGTTTGTGGGAACCTTTATATGCTTAAAGAAGGAAGATCTTTTCATTCTTACATTATTAAAAGCCCTTGTAGCAATGATAAATTGGGGTTAGAAAATGCTCTTCTGGAGATGTATTCTAGATGTGGAGTTATTGATGATGCAAAATCAGTTTTTTATGAGATGCAACAACAGAATGAGTTTTCCTGGACTACTGTCATATCTGGATGTAGTGAATCAGGGCAATCTGCAGAAGCATTTCGGCTGTTTCGAGATATGCTTTTTTATTCAGCATCTTCAAAACCCAGTCAGTTTACTTTGGTCAGTGTTATTCAGGCTTGTGCAATAGCCGAGGCACTTGATTTGGGAAAACAGGTCCATTCTTATATCATAAAATCTGGATTTGAATACTATCCCTTCATTGGAAGTGCACTGGTTAACATGTATGCAGCATTTAAACATGAAATTTTTAATGCTTATCTGGTATTCTTGACCATGAGAGTTCAAGATCTTGTCTCTTGGAGCACCATGTTAACTTCCTGGGTTCAGAATGGTTATCATGAAGAAGCTCTTAAGCTTTTTGCAAAATTCAAAACTTCTCCCATTTTTCGGGTTGATGAGTCCATCTTATCCAGCTGTCTCTCAGCTGCTGCTGGCTTAGCAGCATCAGAGATAGGCAAATGTTTCCATTCCTGGGTTATCAGGCTTGGCTTTGAAAATGATCTTCCCGTGGCTTCTTCCACTATAGACATGTATAGTAAATGTGGAAATATTAAAGATGCCCGTAGGTTTTTCAATTCTATCAGTGACCACAATCTAGTATCTTGGACAGCTATGATATATGGATATGCTTATCACGGGCTTGGAAAAGAAGCCATTGACCTGTTTAATGAGGCTAAAGAAGCTGGGATCGAACCAGATGGCGTCACATTCTCCGGGGTTTTAACTGCATGTAGTCACGCTGGACTCACGCAGAAAGGTTGGGAACTTTTTGAGTACATGCGAAGTGAACACAACTGTGAAGTAACAATAAATCATTATGCCTGCATGGCTGATCTTCTTGGTCGGGCAGCAAAATTGGAAGAAGCAGAGGAGCTGATAAAGAAATCTCCATTTCATTCAAAATCTCTTCTGTGGAAGACATTGCTGGGTGCTTGCTATAAACATGAGAATGCTGAAGTAGGAATCCGAATATCAAAGATGCTTGCAGACATAGAGCTGAATGACCCCTCAACCTATGTTCTACTATCTAACATTTATGCATCTGCTTCAATGTGGCAAAATTCCACGGAGTTCAGAAACAAAATGGTAGAGTGGAATGTTAATAAGAAACCTGGTAGTAGTTGGATTCAGGTGGCAGGTTAA 2652 0.394 MLTRKFHLICSSEPQKNNAFCFQDCVLLLQHLRDHEDVNYGRSLHSFFIKSGLDRDVFVQNNMIRFYGDICGDLKNAHLVFDEIPEPSLISWTSLVSSYIHDGQYVMGLYLFSLLCQSGLRPNEFGFSVALKACRVMQDPIMGRLIHGSIIKSGFESHSFCSASVVHLYAECGDMENSSKLFDEISLGERSEALWNTLLNAYVQMSDAEGALYLFHEMGHSAISPNCLTYTILVKLGANVLDFELARCIHCQTLKLGIDNDVMVGGALVDTYSKLRLLDDACEMFQVLKEKDNVALCSLLAGFNQSGKAEEGLTFFINFLYEGNKPDPFTCASVVSLCSNLKTELAGTQVHCSFIKLGLMMDSYLGSAFINMYGTFGMISNAYKCFLEVCYKNEICISAMINALVLNSNDEKALDLFCWMREVGVVPSKSTISFVLRVCGNLYMLKEGRSFHSYIIKSPCSNDKLGLENALLEMYSRCGVIDDAKSVFYEMQQQNEFSWTTVISGCSESGQSAEAFRLFRDMLFYSASSKPSQFTLVSVIQACAIAEALDLGKQVHSYIIKSGFEYYPFIGSALVNMYAAFKHEIFNAYLVFLTMRVQDLVSWSTMLTSWVQNGYHEEALKLFAKFKTSPIFRVDESILSSCLSAAAGLAASEIGKCFHSWVIRLGFENDLPVASSTIDMYSKCGNIKDARRFFNSISDHNLVSWTAMIYGYAYHGLGKEAIDLFNEAKEAGIEPDGVTFSGVLTACSHAGLTQKGWELFEYMRSEHNCEVTINHYACMADLLGRAAKLEEAEELIKKSPFHSKSLLWKTLLGACYKHENAEVGIRISKMLADIELNDPSTYVLLSNIYASASMWQNSTEFRNKMVEWNVNKKPGSSWIQVAG 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2767 883 Gene3D Tetratricopeptide repeat domain 672 882 IPR011990 GO:0005515
Bisa02g2767 883 Gene3D Tetratricopeptide repeat domain 524 665 IPR011990 GO:0005515
Bisa02g2767 883 Gene3D Tetratricopeptide repeat domain 447 523 IPR011990 GO:0005515
Bisa02g2767 883 NCBIfam pentatricopeptide repeat 396 428 IPR002885 -
Bisa02g2767 883 NCBIfam pentatricopeptide repeat 738 771 IPR002885 -
Bisa02g2767 883 NCBIfam pentatricopeptide repeat 497 523 IPR002885 -
Bisa02g2767 883 NCBIfam pentatricopeptide repeat 703 736 IPR002885 -
Bisa02g2767 883 NCBIfam pentatricopeptide repeat 194 227 IPR002885 -
Bisa02g2767 883 NCBIfam pentatricopeptide repeat 90 124 IPR002885 -
Bisa02g2767 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Bisa02g2767 883 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 527 882 IPR046960 GO:0003723|GO:0009451
Bisa02g2767 883 Gene3D Tetratricopeptide repeat domain 241 349 IPR011990 GO:0005515
Bisa02g2767 883 Gene3D Tetratricopeptide repeat domain 350 446 IPR011990 GO:0005515
Bisa02g2767 883 Gene3D Tetratricopeptide repeat domain 143 240 IPR011990 GO:0005515
Bisa02g2767 883 Gene3D Tetratricopeptide repeat domain 5 142 IPR011990 GO:0005515
Bisa02g2767 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 701 735 IPR002885 -
Bisa02g2767 883 FunFam Pentatricopeptide repeat-containing protein 395 552 - -
Bisa02g2767 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 599 633 IPR002885 -
Bisa02g2767 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
Bisa02g2767 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Bisa02g2767 883 Pfam PPR repeat family 194 235 IPR002885 -
Bisa02g2767 883 Pfam PPR repeat family 701 748 IPR002885 -
Bisa02g2767 883 Pfam PPR repeat family 495 544 IPR002885 -
Bisa02g2767 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Bisa02g2767 883 Pfam E motif 818 880 IPR046848 -
Bisa02g2767 883 FunFam pentatricopeptide repeat-containing protein At2g33680 674 883 - -
Bisa02g2767 883 Pfam PPR repeat 398 424 IPR002885 -
Bisa02g2767 883 Pfam PPR repeat 90 119 IPR002885 -
Bisa02g2767 883 Pfam PPR repeat 678 699 IPR002885 -
Bisa02g2767 883 Pfam PPR repeat 601 627 IPR002885 -
Bisa02g2767 883 Pfam PPR repeat 469 493 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2767 Bisa-ChrBisa02 69981257 69983908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2767 196 882 Glycoside Hydrolase AT3G49170 31.437 2.08e-113 365