Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2680 ATGGGGGACGTGGATCGGGTCGATGATCGGACCTTCAATGCGAATTTCACGGCTGATGGGGTGGGAAGGCTGAGGGAAAGAGTGATGGATAAGCTGAAGGAGATCATGGGGGATTACACTGATGACACTCTTGTGGAATATGTTATTGTGTTATTGAGGAATGGTAGGCGCAAAGATGAAGCAAAGGCTGAGTTGAATGTTTTTTTGGGAGATGACAGTGATTCTTTTGTATTGTGGTTGTGGGATCATTTGGCATTGAATTTAGATTTGTACATACAACCTAAAGAATTGCAGGTTGAAGCTCCTAAAAGAAAGCTCTCATCTGAGGTCCAAGCTGGAGGTGATATTTCTCAGAATTTACATTCACAATCAGATAGAGGAACATCTAGTAATTTATCTAGGAGTCGGCATAACAAAGACTGGAAAGGACTAGTGAGGGGAGGAGCTGAACCGCCTCCTCTTCGGAGCTCTGCGGTTGACAATATTCATTTGGAGGACAAAACCCGAGCTAAAATATATCGTGATCCGAGGTCACGATCTCCACCTCCAGTTAGGAGGAAAAGGGGCCAGCCTGATGAACAATTTAAGACAAAGATGGATGCAGTTTCAAAAGCAACTATGAATGCTCCTCGACGTCTACTCCAGTTTGCTGTGCGAGATGCAGTGGCAACATCAGGGCCATCTAATTTGGGCACATCAGTAGAGCCCTCCTTGAAGCGTCTTCGTTCAGTGGTTTCCACAGCCTCTGGTAATTCATCTTTGGTAAGGCATCCTCAGCCGTTACAGCTTGTTTCCAGGTTGCAAAATTCCATGGCTACAGTGATTAATGCTGTGGCTGAAGCTGCTGAAGATGTGAAAGAAATCAAATCCTCAAGAAGTGTATTTGACCGACTTGGTCGTGGTATGAATCCATTGGATGCTAGCAACCAACTTGAAGATAATTACAGAAGCAAGGAGCAAGACCAATCACTGTATCTTCAAAGATCTGACTACAGTGGGCAGTATGCTGCAAATATGACTTTGCTGGAAAGTGATGCTGGTTTTCTTTCAGATTGTACTTCAGATAATGGGGGTTATGATGATGTCAATGTCATAGGTCATGGGGTGACTGGTGCTTCTCAGATTGGCTTCTCCAGTGGAAACAGGAGACATGATTCACGGATGTTGCAGCATAGTGTAGTGAAAAATGCAGATAATAGTATGCCCCTGAAACCAAATAGAGATGAGGAGCAAGCTTCCGCTGCACCTAGTACTTCTAATAAGATTGTGAATATTTCTGTTAATGTAAATACATGGAATCCCTCGCAATATCAGGAATCAAGAGAGGTTGCAGTAGTAGATGGTCACAAAACTTTAGATAGTGAAACAGGAGCTCCCAGATCTGGCCTGTGGTTGATGAAGGATGATACCAAAAATGTGAAGATTAGTAATGGCAATGAAAGCAATGCTGCTTATATTCAGAAAGAGCCGCAGAAGACCCAGCTATCTACTTCTGGCACTTCTGGTCGTCCTTTAGAGGATGCTGATTCCAGAACCATCTTTGTTAGCAATGTACATTTTGCTGCCACCAAAGACAGCTTGTCTCGTCACTTTAATAAGTTTGGAGAAGTGCTAAAAGTGGTTATAGTTATGGATGCAGCAACAGGCCAACCAAAAGGGTCAGCTTATGTGGAATTCATGCGAAAAGAAGCATCTGATAATGCATTATCTCTGGATGGCACTTCTTTTATGTCTCGCATTCTTAAGGTCGTGAGGAAAAGTGCTGCAAATGTAGAATCTGCTCCAACTATGACATGGCCACGCATAGTTAGGGGTTCTTCATTTCCTTATGCCAGGTTTTCGAGAGCTCCCTATCCAAGAGGTATTCCGGCTTTTAGGCCTTGGGCCCCAATTAAACTTGGAGTCAGGAGCATGCAGTGGAAGCGGGATGCTCAGGGTACTTCTTCTGACAATGGAGTTTCAAATATCAGTGGTATTGCTCTGCCTGCCGCTCGTAGTCTCACCTATGTCAGAACAGAATTTAAAGGCAGTTAG 2034 0.4385 MGDVDRVDDRTFNANFTADGVGRLRERVMDKLKEIMGDYTDDTLVEYVIVLLRNGRRKDEAKAELNVFLGDDSDSFVLWLWDHLALNLDLYIQPKELQVEAPKRKLSSEVQAGGDISQNLHSQSDRGTSSNLSRSRHNKDWKGLVRGGAEPPPLRSSAVDNIHLEDKTRAKIYRDPRSRSPPPVRRKRGQPDEQFKTKMDAVSKATMNAPRRLLQFAVRDAVATSGPSNLGTSVEPSLKRLRSVVSTASGNSSLVRHPQPLQLVSRLQNSMATVINAVAEAAEDVKEIKSSRSVFDRLGRGMNPLDASNQLEDNYRSKEQDQSLYLQRSDYSGQYAANMTLLESDAGFLSDCTSDNGGYDDVNVIGHGVTGASQIGFSSGNRRHDSRMLQHSVVKNADNSMPLKPNRDEEQASAAPSTSNKIVNISVNVNTWNPSQYQESREVAVVDGHKTLDSETGAPRSGLWLMKDDTKNVKISNGNESNAAYIQKEPQKTQLSTSGTSGRPLEDADSRTIFVSNVHFAATKDSLSRHFNKFGEVLKVVIVMDAATGQPKGSAYVEFMRKEASDNALSLDGTSFMSRILKVVRKSAANVESAPTMTWPRIVRGSSFPYARFSRAPYPRGIPAFRPWAPIKLGVRSMQWKRDAQGTSSDNGVSNISGIALPAARSLTYVRTEFKGS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2680 677 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 511 588 IPR000504 GO:0003723
Bisa02g2680 677 Pfam PWI domain 28 85 IPR002483 GO:0006397
Bisa02g2680 677 Gene3D PWI domain 9 90 - -
Bisa02g2680 677 MobiDBLite consensus disorder prediction 160 195 - -
Bisa02g2680 677 MobiDBLite consensus disorder prediction 108 195 - -
Bisa02g2680 677 SUPERFAMILY RNA-binding domain, RBD 503 585 IPR035979 GO:0003676
Bisa02g2680 677 MobiDBLite consensus disorder prediction 111 131 - -
Bisa02g2680 677 Gene3D - 465 584 IPR012677 -
Bisa02g2680 677 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 513 581 IPR000504 GO:0003723
Bisa02g2680 677 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 8 649 IPR040366 GO:0008143|GO:0043488|GO:1900364
Bisa02g2680 677 MobiDBLite consensus disorder prediction 396 419 - -
Bisa02g2680 677 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 15 91 - -
Bisa02g2680 677 SMART rrm1_1 512 584 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2680 Bisa-ChrBisa02 68034111 68044778 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2680 467 581 C2H2 Transcription Factor Family AT2G19380 26.957 7.52e-06 47.4