Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2671 ATGATTTTCTCTCTCGTTCTCCTTCTCGTCGATCGTGTCTTGCACGCGCTAAGCCGTCAGCGACGTCGCTGCCTCTTTCAGTCCTCTTCCATTTGCACCGTCACACAGCTCGCTATGCAGTACACGCACTCCACAGTTCTGCCTCTCTTGTATCTGTTTTTGAATTCGGGTCATAATGCAGTTCGGGTTCGCGGATGCTCAAGAAGCGATGATGACAGTATTCGTAACTCTAAACAGGTCTCGGAGTTTCAAATGTTGTCATGCTTAGAAACAATTTCACCAATCCTCCTATGTCTAAGAGGTTCTGCAAGTTCTTTGGCCGTGGGGCGTGCTTCAAAGGGGAGCAATGTGAATATTCTCATGACAGAAACGATCCTTCAGTTAATCTGCAAGTTCTATCAGCAAGGGCTCTGTGGATATGGCAATCGCTGCAGATACAAACATGTCAAGCTTTCTCAAGATCAGCCCTCAGAAAATGGACACAAATCAAGTTGGGTTCCAAAGGCTACAAAGATTCTCAAACGCAAGCATCAAAAGAAGGATGGAGGCCATGGAGTCTTCTGTACATTTTCTGCTTCAGACTGCCCCTTAGGAGTAAAGTGCTCTTCCATCCATGGAGACCAATGTGTGCACTGTAAAAAGTTCTGCTTGCACCCTTGTGAAGCAAAGCAGAGAGAGAAGCACTTGGGTGCATGTGAGAGAAGGGAGAAGTTCCTGAAGATATTGAAACAAAGTAAAGAAATAGAATGCAACATATGCTGGGAGCGTGTTGTTTCGAAGGGTAAAGCAAATGAACGTAAGTTTGGGGTGCTTCCTGAGTGTGACCATGCTTTCTATTTGTCGTGCATCAAGAATTGGCGTAACAGTGCTCCAGCCTCAGTGTTGAATGTGAATAATAGTGCCATGAGGACCTGCCCTGTGTGCCGAAAGTTATCTTATTACGTCATTTCCAGCACTCTTTGGTATTCTACTAAGGAGGAGAAACAAGAGATTATTCACAACTACAGGACCAGCTGCAAGTTTATTGATTGCAAACACTTTGACTCTGGAAATGGGAACTGTCCATTTGGGAATAACTGTTTCTACAAGCATACAGTGAAGCCTGGCTCATACACATGGATCCATAGGAGGCCGCCACCGCGACCTCCACGCAGACCAACCAACATGAATGATACAACCATCCAATTTGGTTTAGAAAGAAGAGAACTTGAATCAATCAGGCAGAATTTACAGTTCTTCAGTGTTCATACGGAACCTCCCGATATGATGTCTTCATCAGACAGGCCAGGTGGTTCAGAGGCATCTTCTGATGAAGAAATGGACTCTTTTAATTTGGCTGGTATACTGGAGACCCTGGACTCTGATTCAGAAACCACTGCCTCTGAAGATTTCGACCCATTCGATTTCATTATGCCTTCAACGCAGAGACTGGGTGGTTCGTGGTGGTGTGGTACTCAAGAGGTTGGTGACGAAGAAACAGGCACTGTTGAAGAATTATCCGATGATGGATATCACTACTATTTTGGAGAACTGGATTACGAAGAAGGGAACCCTTCAGAGCCATCATGGTTATCGATGATCCTTCATTCTAGCGTGGAAGAAGATACTGGTTCCAGTGATGGGTAG 1626 0.4514 MIFSLVLLLVDRVLHALSRQRRRCLFQSSSICTVTQLAMQYTHSTVLPLLYLFLNSGHNAVRVRGCSRSDDDSIRNSKQVSEFQMLSCLETISPILLCLRGSASSLAVGRASKGSNVNILMTETILQLICKFYQQGLCGYGNRCRYKHVKLSQDQPSENGHKSSWVPKATKILKRKHQKKDGGHGVFCTFSASDCPLGVKCSSIHGDQCVHCKKFCLHPCEAKQREKHLGACERREKFLKILKQSKEIECNICWERVVSKGKANERKFGVLPECDHAFYLSCIKNWRNSAPASVLNVNNSAMRTCPVCRKLSYYVISSTLWYSTKEEKQEIIHNYRTSCKFIDCKHFDSGNGNCPFGNNCFYKHTVKPGSYTWIHRRPPPRPPRRPTNMNDTTIQFGLERRELESIRQNLQFFSVHTEPPDMMSSSDRPGGSEASSDEEMDSFNLAGILETLDSDSETTASEDFDPFDFIMPSTQRLGGSWWCGTQEVGDEETGTVEELSDDGYHYYFGELDYEEGNPSEPSWLSMILHSSVEEDTGSSDG 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2671 541 Pfam CCCH-type zinc finger 129 148 IPR041367 -
Bisa02g2671 541 MobiDBLite consensus disorder prediction 416 438 - -
Bisa02g2671 541 CDD RING-HC_MKRN 248 309 - -
Bisa02g2671 541 ProSiteProfiles Zinc finger C3H1-type profile. 338 367 IPR000571 GO:0046872
Bisa02g2671 541 SMART c3hfinal6 338 366 IPR000571 GO:0046872
Bisa02g2671 541 SMART c3hfinal6 126 150 IPR000571 GO:0046872
Bisa02g2671 541 SMART c3hfinal6 183 207 IPR000571 GO:0046872
Bisa02g2671 541 Pfam zinc-RING finger domain 249 310 IPR001841 -
Bisa02g2671 541 ProSiteProfiles Zinc finger C3H1-type profile. 129 151 IPR000571 GO:0046872
Bisa02g2671 541 SUPERFAMILY RING/U-box 243 315 - -
Bisa02g2671 541 ProSiteProfiles Zinc finger RING-type profile. 250 309 IPR001841 -
Bisa02g2671 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 311 IPR013083 -
Bisa02g2671 541 PANTHER MAKORIN-RELATED 129 454 IPR045072 GO:0000209|GO:0061630
Bisa02g2671 541 SMART ring_2 250 308 IPR001841 -
Bisa02g2671 541 SUPERFAMILY CCCH zinc finger 127 148 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2671 Bisa-ChrBisa02 67838632 67845471 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa02g2671 zf-RING_5 1e-06 CL0229