Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2556 ATGGCTGGTTTAGCCTTTGCCGCTTATAATTCACGGGGTCGATCTGCTGGACACTATAATGTGTCTGGAATGATTCCTGTGAACTCAGATTGTGGTAGAATGTTAATTTTACTGAAGATGAAAATTACTTTTGATTCTAGGCTGCTGGTTGCTGTTATTAGCATGGCTTCTAGTAATCCATTCTTTGATGATATAAGGAGCAAGTCTGATGTTGATCCTCCTTCAAATGAAGAGCCGATGGATATCAGTGAGCTTGTCAATGATCCTACGCAAACTGCTTTGAAATCTAATGTGACTGTTACAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTGTGCTTGAATGCAATGTACCCTCCAATCCACCAGTGTTCAAATGGTCACACTTTATGCTCGGGTTGCAAACCCAGGGTCCACAACCGTTGCCCTACTTGTCGACATGAGCTTGGCAATATAAGATGCCTGGCATTGGAGAAGGTGGCTGCATCTCTGGAACTTCCTTGTAAATATCAACCTTTTGGGTGCATGGGCATATATCCATATTACTGCAAGCTAAAACATGAATCTCAATGTGCATATAGACCTTATAACTGTCCATATGCTGGTTCAGAATGCAGTGTCATTGGTGATATTCCTTTTATGGTCGCCCATCTGAAAGACGATCACAAAGTGGACATGCACAGTGGTAGCACTTTTAACCATCGCTATGTCAAATCAAATCCACAAGAAGTTGAAAACGCCACGTGGATGCTTACGGTCTTCAGTTGCTTTGGTCAGTATTTTTGTCTGCACTTCGAAGCTTTTCAGCTGGGAATGGCTCCAGTCTACATAGCCTTCTTGCGATTTATGGGCGATGATAATGAGGCAAAGAACTATAGCTACAGTCTTGAGGTGGGAGGAAACGGGAGGAAGATGACTTGGCAGGGTGTGCCAAGAAGCATTAGGGACAGCCACCGCAAGGTTCGGGACAGTTTCGATGGTCTCATAATTCAAAGGAACATGGCTCTCTTTTTTTCAGGGGGTGACAGGAAGGAATTGAAGCTACGGGTCACTGGGAGAATCTGGAAAGAACAGTGA 1077 0.441 MAGLAFAAYNSRGRSAGHYNVSGMIPVNSDCGRMLILLKMKITFDSRLLVAVISMASSNPFFDDIRSKSDVDPPSNEEPMDISELVNDPTQTALKSNVTVTSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQPFGCMGIYPYYCKLKHESQCAYRPYNCPYAGSECSVIGDIPFMVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2556 358 FunFam E3 ubiquitin-protein ligase SINAT3 162 218 - -
Bisa02g2556 358 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 219 351 IPR008974 GO:0005515
Bisa02g2556 358 FunFam E3 ubiquitin-protein ligase SINAT5-like 68 161 - -
Bisa02g2556 358 FunFam E3 ubiquitin-protein ligase SINAT5-like 219 351 - -
Bisa02g2556 358 CDD RING-HC_SIAHs 108 146 - -
Bisa02g2556 358 Pfam Seven in absentia protein family 152 351 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bisa02g2556 358 CDD Sina 224 352 - -
Bisa02g2556 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 218 IPR013083 -
Bisa02g2556 358 SUPERFAMILY RING/U-box 104 151 - -
Bisa02g2556 358 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 94 357 - -
Bisa02g2556 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 162 IPR013083 -
Bisa02g2556 358 ProSiteProfiles Zinc finger RING-type profile. 110 146 IPR001841 -
Bisa02g2556 358 ProSiteProfiles Zinc finger SIAH-type profile. 163 223 IPR013010 GO:0008270
Bisa02g2556 358 SUPERFAMILY TRAF domain-like 163 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2556 Bisa-ChrBisa02 64725338 64729567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2556 77 358 C3H Transcription Factor Family AT2G41980 74.648 3.00e-160 449