Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g2538 ATGAGTCCACCTGCTGAGGAGAAGATGGAAGATGGTAAGCCTTTAACTGTATCAGCTAACAGTCCCCCAGTTGATGGAGAACATGGTGACACCGCTGATTCTCGATTCTCTGACTTCTGCAAGAATGGGCTATCAATGGACGAGGAAAGTTGTAGACAAGCAATGAAGCTGTTCACAGAAACCAAGCACCTTCTGCAGACAAATATTTCATCTTTAGGGAATGGAACGTATGAAGAGGCAGAACGCTATTGGTTTTCATTTATTTTATACTCTGTCAAGAGATTGGCTGAGAAGAATGCAGACAGTGAGAAGGAAGGAACTGATAGCAATGGGCTTACCTTGTGCCAGATATTGAGAAAGGCAAAGCTAAACGTTGTGGACTTTTTCAAAGAACTTCCCCAGTTTGTTGTTAAGGGTGGTCCAATTTTAAGTAATTTATATGGCACAGATTGGGAAAACAGGCTTGAGGCGAAGGAGATGCAGGCAAATTTTCTTCACTTAAGCATTCTGAGCAAGTATTATAAACGTGCATTTGGGGAGTTTTTCTTGGCAAATGATGCAAATATTGAAAAGCAATCAACTGTTTCTGTGGCTGCTGGTTGTGCATCTCAATATCATCGTTTTGGATGGTTGCTTTTCTTGGCCCTTCGTGTACATGCTTTTAGCCGTTTTAAAGACTTAGTGACTTGCACAAATGGTTTAGTTTCTATATTGGCTATCATGATCATTCACATTCCTGCTCGCTTTAGAAATTTTAACATCCATGACTCCTCACGCTTTGTTAAGAGAAGTAGCATAGGTGTGGACATAGTTGCATCACTTTGCAACATCTACGACACCTCAGAAGATGAAGTGAGGAAAACCATGGAGAAAGCCAATAATTTAATTGCAGATATATTGAAGAAGAAGTCTTCTCCTGCATCTGAATGCGAAACTGAAACATTAGAGAATATTGACAAAGATGGTCTGGTCTACTTTAATGATCTTATGGAGGAATCATCTCTCCCATCCTGTTTAAATATCCTAGAAAAAGATTATGATTATGCCATTCGTAACAAAGGTGAACTGGATGAGAGGTTGTTCATCAATGAAGATGACAGTTTACTTGCTTCAGGAAGCTTTTCTGGAGGTTCGATGCCAGCAAGTGGTGTCAAGAGGAAATTTGATTCATTGGCATCACCTGCAAAGACAATTACAAGTCCACTCTCTCCCCAGAGCTCTCCTGCATCTCATGCAAATGGCATTTCGGGTAATACAAATTCAAAGATGGCAGCCACCCCTGTAAGCACTGCCATGACTACTGCTAAGTGGCTTCGTACTGTCATATCTCCACTTCCATCCAAGCCCTCACAAGAGCTTGAGAGATTTCTGGCATCATGTGATAGGGATGTTACTAGTGATGTAGTGCGTAGGGCCCAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTAGGAGAACGATGTTTAACTGGAAGCCTTCAAAGTGCAAATCTGATGGACAATGTTTGGGCAGAACAAAGAAGACTGGAAGCCCTTAAGCTATATTATAGGGTCTTGGAGGCAATGTGCAGGGCAGAAGCCCAAATACTGCATGCAACTAATTTAACCTCACTATTAACTAATGAGAGGTTCCATAGATGTATGCTTGCATGTTCTGCAGAACTAGTCCTGGCAACTCATAAAACAGTAACAATGTTGTTTCCTGCGGTGCTGGAGAGGACTGGGATTACAGCTTTCGACCTTAGCAAGGTGATAGAGAGTTTCATAAGACATGAGGATTCTCTCCCAAGAGAACTGAGACGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGTATGGTATGGGAAAAGGGTTCCTCTATGTATAATTCTTTGACAGTTGCTAGACCTTCCCTATCTTCAGAAATTAACCGTCTTGGACTGTTGGCGGAACCAATGCCATCGTTAGATGCAATTGCGATGCACATTAACTTCTCTTGTGGTGGGTTGCCCCCTGTGCCTTCCTTGCAGAAGTTTGAGACTTCACCGAGTCAGAATGGGGATATCAGGTCTCCAAAGCGTCTCTGCACAGAATATCGAAGTGTACTAGCAGAACGAAATTCCTTTACATCACCGGTGAAGGATCGGCTTCTGGGCAACCTTAAGTCAAAGTTAACCCCTCCTTTGCAGTCAGCATTTGCGAGTCCAACAAGACCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGAATCAATATCTTTTTTGGAAAGATTGTAAAGTTGGCAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAATTGTCTCAGCAGATAAGAGAGAATGTATACTGTCTTTTCCAACAAATTCTAAATCAACGGACGTCTCTCTTCTTTAACCGCCATATTGACCAAATCATTCTCTGTTGTTTCTATGGAATTGCAAAGATTTCTCAATTGAACCTAACTTTTAGGGAGATCATTTACAACTATAGGAAGCAACCACAATGCAAGTCACAAGTTTTTCGTAGTGTATTTATTGATTGGTCATCAACACGACGAAATGGGAGAACAGGACAGGAGCATGTTGATATCATCACATTTTACAATGAAATATTTATTCCCTCTGTAAAAGCTCTTCTGGTTGAGCTTGGTCCTGGGGGAACAACTACAAAAATCAACCGAATACCTGAATCCAACAGCAACAATGATGGCCATTTAGCTCAATGTCCGGGATCTCCTAAAATCTCTCCTTTTCCTAGCCTTCCTGATATGTCCCCAAAAAAAGTGTCTGCTGCACACAATGTCTATGTCTCACCATTACGATCATCCAAGATGGATGCTTTAATATCACATAGCTCAAAAAGTTACTATGCCTGTGTTGGGGAGAGCACTCATGCGTATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGGTTGAATGGCACCCGGAAGGTTCGAGGTCCCCTCAACTTCGATGATGTGGACGTTGGCTTGGTCAGTGACTCCATGGTTGCAAACAGCCTCTACCTTCAGAATGGCAGTTGTGCATCCTCTTCAGGTGCACCATTGAAGTCTGAGCAGCCAGACTCCTGA 3093 0.4239 MSPPAEEKMEDGKPLTVSANSPPVDGEHGDTADSRFSDFCKNGLSMDEESCRQAMKLFTETKHLLQTNISSLGNGTYEEAERYWFSFILYSVKRLAEKNADSEKEGTDSNGLTLCQILRKAKLNVVDFFKELPQFVVKGGPILSNLYGTDWENRLEAKEMQANFLHLSILSKYYKRAFGEFFLANDANIEKQSTVSVAAGCASQYHRFGWLLFLALRVHAFSRFKDLVTCTNGLVSILAIMIIHIPARFRNFNIHDSSRFVKRSSIGVDIVASLCNIYDTSEDEVRKTMEKANNLIADILKKKSSPASECETETLENIDKDGLVYFNDLMEESSLPSCLNILEKDYDYAIRNKGELDERLFINEDDSLLASGSFSGGSMPASGVKRKFDSLASPAKTITSPLSPQSSPASHANGISGNTNSKMAATPVSTAMTTAKWLRTVISPLPSKPSQELERFLASCDRDVTSDVVRRAQIILQAIFPSSPLGERCLTGSLQSANLMDNVWAEQRRLEALKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSEINRLGLLAEPMPSLDAIAMHINFSCGGLPPVPSLQKFETSPSQNGDIRSPKRLCTEYRSVLAERNSFTSPVKDRLLGNLKSKLTPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRISGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGIAKISQLNLTFREIIYNYRKQPQCKSQVFRSVFIDWSSTRRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTTTKINRIPESNSNNDGHLAQCPGSPKISPFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPLKSEQPDS 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g2538 1030 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 30 1028 IPR028309 GO:0006357|GO:0051726
Bisa02g2538 1030 FunFam Retinoblastoma-related protein 1 429 617 - -
Bisa02g2538 1030 Pfam Retinoblastoma-associated protein B domain 748 875 IPR002719 GO:0005634|GO:0051726
Bisa02g2538 1030 FunFam Retinoblastoma-related protein 1 205 363 - -
Bisa02g2538 1030 SUPERFAMILY Cyclin-like 746 918 IPR036915 -
Bisa02g2538 1030 MobiDBLite consensus disorder prediction 395 423 - -
Bisa02g2538 1030 SUPERFAMILY Cyclin-like 434 629 IPR036915 -
Bisa02g2538 1030 SMART DUF3452_2 95 244 IPR024599 -
Bisa02g2538 1030 Pfam Domain of unknown function (DUF3452) 106 244 IPR024599 -
Bisa02g2538 1030 MobiDBLite consensus disorder prediction 1 33 - -
Bisa02g2538 1030 Gene3D - 429 617 - -
Bisa02g2538 1030 FunFam Retinoblastoma-related protein 1 701 911 - -
Bisa02g2538 1030 Pfam Retinoblastoma-associated protein A domain 426 627 IPR002720 GO:0005634|GO:0051726
Bisa02g2538 1030 Gene3D - 706 900 - -
Bisa02g2538 1030 Gene3D - 205 363 - -
Bisa02g2538 1030 SMART RB_A_2 426 627 IPR002720 GO:0005634|GO:0051726
Bisa02g2538 1030 CDD CYCLIN_AtRBR_like 748 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g2538 Bisa-ChrBisa02 64069161 64076873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g2538 9 1030 Core Cell Cycle Gene Families AT3G12280 71.567 0.0 1444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Bisa02g2538 RB_A 5.1e-65 CL0065